RNA–Protein interactions for RNA: ENST00000541513.2

DDB1-219, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 958 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-219ENST00000541513 SSH3Q8TE77 659 aa6.3□□□□□ -1.4
DDB1-219ENST00000541513 CRISPLD1Q9H336 500 aa6.3□□□□□ -1.4
DDB1-219ENST00000541513 JMJD4Q9H9V9 463 aa6.3□□□□□ -1.4
DDB1-219ENST00000541513 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.3□□□□□ -1.4
DDB1-219ENST00000541513 GMPR2Q9P2T1 348 aaKnown RBP6.3□□□□□ -1.4
DDB1-219ENST00000541513 MAFFQ9ULX9 164 aa6.3□□□□□ -1.4
DDB1-219ENST00000541513 SOX13Q9UN79 622 aa6.3□□□□□ -1.4
DDB1-219ENST00000541513 PPIP5K1Q6PFW1 1433 aa6.3□□□□□ -1.4
DDB1-219ENST00000541513 BRD4O60885 1362 aaPredicted RBP6.3□□□□□ -1.4
DDB1-219ENST00000541513 SHPRHQ149N8 1683 aa6.3□□□□□ -1.4
DDB1-219ENST00000541513 ALS2Q96Q42 1657 aa6.3□□□□□ -1.4
DDB1-219ENST00000541513 NPHP3Q7Z494 1330 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 A6NLC8 198 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 MAN1A2O60476 641 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 ZBED4O75132 1171 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 SKAP2O75563 359 aaPredicted RBP6.29□□□□□ -1.4
DDB1-219ENST00000541513 FGF18O76093 207 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 PAPLNO95428 1278 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 THP07101 528 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 ZBTB48P10074 688 aaPredicted RBP6.29□□□□□ -1.4
DDB1-219ENST00000541513 AGXTP21549 392 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 GRK2P25098 689 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 LIFRP42702 1097 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 PHKA2P46019 1235 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 PIP4K2BP78356 416 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 SNX17Q15036 470 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 CNN3Q15417 329 aaKnown RBP6.29□□□□□ -1.4
DDB1-219ENST00000541513 SF1Q15637 639 aaKnown RBP6.29□□□□□ -1.4
DDB1-219ENST00000541513 CLUL1Q15846 466 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 DNAJC21Q5F1R6 531 aaKnown RBP6.29□□□□□ -1.4
DDB1-219ENST00000541513 CCDC30Q5VVM6 783 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 FAM205BPQ63HN1 556 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 ZNF449Q6P9G9 518 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 TXNDC11Q6PKC3 985 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 NRKQ7Z2Y5 1582 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 VN1R5Q7Z5H4 357 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 ANKRD13BQ86YJ7 626 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 ERC1Q8IUD2 1116 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 ZNF527Q8NB42 609 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 TMEM145Q8NBT3 493 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 DDX54Q8TDD1 881 aaKnown RBP6.29□□□□□ -1.4
DDB1-219ENST00000541513 GPBAR1Q8TDU6 330 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 ASB12Q8WXK4 309 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 ACSF2Q96CM8 615 aaPredicted RBP6.29□□□□□ -1.4
DDB1-219ENST00000541513 TBC1D31Q96DN5 1066 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 CCDC34Q96HJ3 373 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 BAG1Q99933 345 aaPredicted RBP6.29□□□□□ -1.4
DDB1-219ENST00000541513 LRFN3Q9BTN0 628 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 CCDC68Q9H2F9 335 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 NKX2-4Q9H2Z4 354 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 ZNF395Q9H8N7 513 aaPredicted RBP6.29□□□□□ -1.4
DDB1-219ENST00000541513 DCP1AQ9NPI6 582 aaPredicted RBP6.29□□□□□ -1.4
DDB1-219ENST00000541513 OXSMQ9NWU1 459 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 HDAC5Q9UQL6 1122 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 JAG2Q9Y219 1238 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 AKT3Q9Y243 479 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 USP54Q70EL1 1684 aa6.29□□□□□ -1.4
DDB1-219ENST00000541513 COL22A1Q8NFW1 1626 aaPredicted RBP6.28□□□□□ -1.4
DDB1-219ENST00000541513 CD163L1Q9NR16 1453 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 SOS2Q07890 1332 aaPredicted RBP6.28□□□□□ -1.4
DDB1-219ENST00000541513 CPSF1Q10570 1443 aaKnown RBP6.28□□□□□ -1.4
DDB1-219ENST00000541513 TRIM64CA6NLI5 447 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 TISP43B9A030 160 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 B9A039 149 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 KPNA5O15131 536 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 FFAR2O15552 330 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 HOXC11O43248 304 aaPredicted RBP6.28□□□□□ -1.4
DDB1-219ENST00000541513 HTATSF1O43719 755 aaKnown RBP6.28□□□□□ -1.4
DDB1-219ENST00000541513 AHCYL1O43865 530 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 UBOX5O94941 541 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 DNTTP04053 509 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 C5AR1P21730 350 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 MSX1P28360 303 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 CTSOP43234 321 aaPredicted RBP6.28□□□□□ -1.4
DDB1-219ENST00000541513 TDO2P48775 406 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 FXR1P51114 621 aaKnown RBP eCLIP6.28□□□□□ -1.41e-6■■■□□ 17.8
DDB1-219ENST00000541513 GRM1Q13255 1194 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 PPP2R5DQ14738 602 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 POSTNQ15063 836 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 ZC3H12AQ5D1E8 599 aaKnown RBP6.28□□□□□ -1.4
DDB1-219ENST00000541513 PLA2G2CQ5R387 149 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 GTF2IRD2BQ6EKJ0 949 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 RSPO2Q6UXX9 243 aaPredicted RBP6.28□□□□□ -1.4
DDB1-219ENST00000541513 GTF2IRD2Q86UP8 949 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 LRRTM4Q86VH4 590 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 CMIPQ8IY22 773 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 ARL10Q8N8L6 244 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 SIMC1Q8NDZ2 872 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 MPHOSPH8Q99549 860 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 COLEC11Q9BWP8 271 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 KIAA1683Q9H0B3 1180 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 MAGEH1Q9H213 219 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 RASSF4Q9H2L5 321 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 KRT82Q9NSB4 513 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 MRGBPQ9NV56 204 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 FAM86C1Q9NVL1 165 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 GRHPRQ9UBQ7 328 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 SBNO1A3KN83 1393 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 CRYBG1Q9Y4K1 1723 aa6.28□□□□□ -1.4
DDB1-219ENST00000541513 ACEP12821 1306 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms