RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 CNKSR2Q8WXI2 1034 aa18.77■□□□□ 0.6
SPIDR-227ENST00000541342 RIT2Q99578 217 aa18.77■□□□□ 0.6
SPIDR-227ENST00000541342 ZHX3Q9H4I2 956 aa18.77■□□□□ 0.6
SPIDR-227ENST00000541342 EPHB4P54760 987 aa18.77■□□□□ 0.59
SPIDR-227ENST00000541342 DNAJC21Q5F1R6 531 aaKnown RBP18.77■□□□□ 0.59
SPIDR-227ENST00000541342 NIPA1Q7RTP0 329 aa18.77■□□□□ 0.59
SPIDR-227ENST00000541342 SAMD3Q8N6K7 520 aa18.77■□□□□ 0.59
SPIDR-227ENST00000541342 CAVIN3Q969G5 261 aa18.77■□□□□ 0.59
SPIDR-227ENST00000541342 PXMP2Q9NR77 195 aa18.77■□□□□ 0.59
SPIDR-227ENST00000541342 ZSCAN5CA6NGD5 496 aaPredicted RBP18.76■□□□□ 0.59
SPIDR-227ENST00000541342 GLI1P08151 1106 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 APBA1Q02410 837 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 PPFIA1Q13136 1202 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 RMDN3Q96TC7 470 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 AGO4Q9HCK5 861 aaKnown RBP18.76■□□□□ 0.59
SPIDR-227ENST00000541342 EPB41P11171 864 aaKnown RBP18.76■□□□□ 0.59
SPIDR-227ENST00000541342 BAATQ14032 418 aaPredicted RBP18.76■□□□□ 0.59
SPIDR-227ENST00000541342 RINT1Q6NUQ1 792 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 EMBQ6PCB8 327 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 FOXR2Q6PJQ5 311 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 NELFCDQ8IXH7 590 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 DCPSQ96C86 337 aaKnown RBP18.76■□□□□ 0.59
SPIDR-227ENST00000541342 KCTD10Q9H3F6 313 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 TMOD4Q9NZQ9 345 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 PNMA2Q9UL42 364 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 EPHA7Q15375 998 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 SFR1Q86XK3 245 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 KCTD17Q8N5Z5 321 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 PDCD2LQ9BRP1 358 aa18.76■□□□□ 0.59
SPIDR-227ENST00000541342 SSU72P8A0A1W2PR75 194 aa18.75■□□□□ 0.59
SPIDR-227ENST00000541342 CCT5P48643 541 aa18.75■□□□□ 0.59
SPIDR-227ENST00000541342 SH3D19Q5HYK7 790 aa18.75■□□□□ 0.59
SPIDR-227ENST00000541342 TTC19Q6DKK2 380 aaPredicted RBP18.75■□□□□ 0.59
SPIDR-227ENST00000541342 BANK1Q8NDB2 785 aa18.75■□□□□ 0.59
SPIDR-227ENST00000541342 CAPS2Q9BXY5 557 aa18.75■□□□□ 0.59
SPIDR-227ENST00000541342 RABEP2Q9H5N1 569 aa18.75■□□□□ 0.59
SPIDR-227ENST00000541342 LOC285556D6RIA3 1793 aa18.75■□□□□ 0.59
SPIDR-227ENST00000541342 SPDYE16A6NNV3 312 aaPredicted RBP18.75■□□□□ 0.59
SPIDR-227ENST00000541342 EIF3HO15372 352 aaKnown RBP eCLIP18.75■□□□□ 0.593e-7■□□□□ 10.4
SPIDR-227ENST00000541342 OAZ1P54368 228 aa18.75■□□□□ 0.59
SPIDR-227ENST00000541342 MTMR1Q13613 665 aa18.75■□□□□ 0.59
SPIDR-227ENST00000541342 SULF1Q8IWU6 871 aa18.75■□□□□ 0.59
SPIDR-227ENST00000541342 NLRC4Q9NPP4 1024 aa18.75■□□□□ 0.59
SPIDR-227ENST00000541342 LCTP09848 1927 aa18.75■□□□□ 0.59
SPIDR-227ENST00000541342 GOLGA8KD6RF30 607 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 FAM153BP0C7A2 387 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 MYCLP12524 364 aaPredicted RBP18.74■□□□□ 0.59
SPIDR-227ENST00000541342 FAM153CQ494X1 144 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 CCDC181Q5TID7 509 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 C1orf186Q6ZWK4 172 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 TSG101Q99816 390 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 LXNQ9BS40 222 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 FAM153AQ9UHL3 310 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 HOXD13P35453 343 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 TREML2Q5T2D2 321 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 C8orf74Q6P047 294 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 ZIM3Q96PE6 472 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 NOX5Q96PH1 765 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 LOXHD1Q8IVV2 1947 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 CARSP49589 748 aaKnown RBP18.74■□□□□ 0.59
SPIDR-227ENST00000541342 EPM2AIP1Q7L775 607 aaPredicted RBP18.74■□□□□ 0.59
SPIDR-227ENST00000541342 GDF3Q9NR23 364 aa18.74■□□□□ 0.59
SPIDR-227ENST00000541342 ESYT3A0FGR9 886 aa18.73■□□□□ 0.59
SPIDR-227ENST00000541342 ATP2A1O14983 1001 aa18.73■□□□□ 0.59
SPIDR-227ENST00000541342 MUTP22033 750 aa18.73■□□□□ 0.59
SPIDR-227ENST00000541342 ARHGEF16Q5VV41 709 aa18.73■□□□□ 0.59
SPIDR-227ENST00000541342 RNF10Q8N5U6 811 aaKnown RBP18.73■□□□□ 0.59
SPIDR-227ENST00000541342 PPM1EQ8WY54 764 aa18.73■□□□□ 0.59
SPIDR-227ENST00000541342 EFCC1Q9HA90 598 aa18.73■□□□□ 0.59
SPIDR-227ENST00000541342 KIAA1217Q5T5P2 1943 aa18.73■□□□□ 0.59
SPIDR-227ENST00000541342 SFI1A8K8P3 1242 aa18.73■□□□□ 0.59
SPIDR-227ENST00000541342 KRT14P02533 472 aa18.73■□□□□ 0.59
SPIDR-227ENST00000541342 MYBP10242 640 aa18.73■□□□□ 0.59
SPIDR-227ENST00000541342 GNGT1P63211 74 aa18.73■□□□□ 0.59
SPIDR-227ENST00000541342 EDEM3Q9BZQ6 932 aa18.73■□□□□ 0.59
SPIDR-227ENST00000541342 ATP9AO75110 1047 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 CPP00450 1065 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 FKBP3Q00688 224 aaKnown RBP18.72■□□□□ 0.59
SPIDR-227ENST00000541342 TTC31Q49AM3 519 aaPredicted RBP18.72■□□□□ 0.59
SPIDR-227ENST00000541342 ALS2CLQ60I27 953 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 CACNA2D4Q7Z3S7 1137 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 EFCAB13Q8IY85 973 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 SH2D3CQ8N5H7 860 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 PIK3R5Q8WYR1 880 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 NACC1Q96RE7 527 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 CEP72Q9P209 647 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 TRAF5O00463 557 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 PALMO75781 387 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 FGFR1OPO95684 399 aaKnown RBP18.72■□□□□ 0.59
SPIDR-227ENST00000541342 MIER3Q7Z3K6 550 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 ZNF233A6NK53 670 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 PEX10O60683 326 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 KLRC1P26715 233 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 SKOR1P84550 965 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 TRADDQ15628 312 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 TDRD12Q587J7 1177 aaKnown RBP18.72■□□□□ 0.59
SPIDR-227ENST00000541342 GBP6Q6ZN66 633 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 IQCKQ8N0W5 287 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 BCAS4Q8TDM0 211 aa18.72■□□□□ 0.59
SPIDR-227ENST00000541342 TEX13BQ9BXU2 312 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms