RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 BECN2A8MW95 431 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 TAF4O00268 1085 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 ZBTB5O15062 677 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 RAD21O60216 631 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 PLA2G6O60733 806 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 PPFIA3O75145 1194 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 PARNO95453 639 aaKnown RBP9.38□□□□□ -0.91
CHD4-208ENST00000540960 FOSP01100 380 aaPredicted RBP9.38□□□□□ -0.91
CHD4-208ENST00000540960 ITGB1P05556 798 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 MYL1P05976 194 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 FDX1P10109 184 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 PFKFB1P16118 471 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 GCFC2P16383 781 aaKnown RBP9.38□□□□□ -0.91
CHD4-208ENST00000540960 ADCY7P51828 1080 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 LMNB2Q03252 620 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 SNW1Q13573 536 aaKnown RBP9.38□□□□□ -0.91
CHD4-208ENST00000540960 SOWAHCQ53LP3 525 aaPredicted RBP9.38□□□□□ -0.91
CHD4-208ENST00000540960 N4BP2L1Q5TBK1 243 aaPredicted RBP9.38□□□□□ -0.91
CHD4-208ENST00000540960 SLFN13Q68D06 897 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 SYCE2Q6PIF2 218 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 REXO1Q8N1G1 1221 aaKnown RBP9.38□□□□□ -0.91
CHD4-208ENST00000540960 IQUBQ8NA54 791 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 CNNM3Q8NE01 707 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 SPPL3Q8TCT6 385 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 COPS5Q92905 334 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 CUL5Q93034 780 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 BPIFA3Q9BQP9 254 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 RTP3Q9BQQ7 232 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 IFIH1Q9BYX4 1025 aaKnown RBP9.38□□□□□ -0.91
CHD4-208ENST00000540960 RBSNQ9H1K0 784 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 CUEDC2Q9H467 287 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 CCDC39Q9UFE4 941 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 HPSEQ9Y251 543 aa9.38□□□□□ -0.91
CHD4-208ENST00000540960 SMG1Q96Q15 3661 aaKnown RBP9.38□□□□□ -0.91
CHD4-208ENST00000540960 ATP2A1O14983 1001 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 EEF2P13639 858 aaKnown RBP9.37□□□□□ -0.91
CHD4-208ENST00000540960 ZNF165P49910 485 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 CPT1AP50416 773 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 NDUFA8P51970 172 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 SHC2P98077 582 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 ATP2C1P98194 919 aaPredicted RBP9.37□□□□□ -0.91
CHD4-208ENST00000540960 NR5A1Q13285 461 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 CAMK4Q16566 473 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 ZC3H14Q6PJT7 736 aaKnown RBP9.37□□□□□ -0.91
CHD4-208ENST00000540960 DTHD1Q6ZMT9 781 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 PIK3AP1Q6ZUJ8 805 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 FAM160B2Q86V87 743 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 SIX5Q8N196 739 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 CMTR1Q8N1G2 835 aaKnown RBP9.37□□□□□ -0.91
CHD4-208ENST00000540960 SAMD3Q8N6K7 520 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 OR6J1Q8NGC5 347 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 CLP1Q92989 425 aaKnown RBP9.37□□□□□ -0.91
CHD4-208ENST00000540960 TNFRSF25Q93038 417 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 CCDC47Q96A33 483 aaKnown RBP9.37□□□□□ -0.91
CHD4-208ENST00000540960 SLF1Q9BQI6 1058 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 FUCA2Q9BTY2 467 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 WDR11Q9BZH6 1224 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 LRRC27Q9C0I9 530 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 EHMT1Q9H9B1 1298 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 RIC8AQ9NPQ8 531 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 A1CFQ9NQ94 594 aaKnown RBP9.37□□□□□ -0.91
CHD4-208ENST00000540960 RMND1Q9NWS8 449 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 KIAA1468Q9P260 1216 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 FBXO2Q9UK22 296 aaPredicted RBP9.37□□□□□ -0.91
CHD4-208ENST00000540960 USP18Q9UMW8 372 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 ITPR1Q14643 2758 aa9.37□□□□□ -0.91
CHD4-208ENST00000540960 A0A1B0GVL5 298 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 POTEMA6NI47 508 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 SRRM3A6NNA2 597 aaPredicted RBP9.36□□□□□ -0.91
CHD4-208ENST00000540960 F5H6K3 240 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 SLC30A4O14863 429 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 BMP3P12645 472 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 MARCKSP29966 332 aaPredicted RBP9.36□□□□□ -0.91
CHD4-208ENST00000540960 TOB1P50616 345 aaPredicted RBP9.36□□□□□ -0.91
CHD4-208ENST00000540960 KLRC3Q07444 240 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 AP3B2Q13367 1082 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 HIC1Q14526 733 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 TMEM266Q2M3C6 531 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 PLEKHG4Q58EX7 1191 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 SPECC1Q5M775 1068 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 WWC2Q6AWC2 1192 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 POTEGQ6S5H5 508 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 BTNL9Q6UXG8 535 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 KRBA2Q6ZNG9 492 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 NEK8Q86SG6 692 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 MAML2Q8IZL2 1156 aaPredicted RBP9.36□□□□□ -0.91
CHD4-208ENST00000540960 STAG2Q8N3U4 1231 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 KCTD17Q8N5Z5 321 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 GPR161Q8N6U8 529 aaKnown RBP9.36□□□□□ -0.91
CHD4-208ENST00000540960 CHST13Q8NET6 341 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 MTMR8Q96EF0 704 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 AMNQ9BXJ7 453 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 MAF1Q9H063 256 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 RNF39Q9H2S5 420 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 POMKQ9H5K3 350 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 TLE6Q9H808 572 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 GJB4Q9NTQ9 266 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.36□□□□□ -0.91
CHD4-208ENST00000540960 WDFY3Q8IZQ1 3526 aa9.36□□□□□ -0.91
CHD4-208ENST00000540960 COL4A3Q01955 1670 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms