RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 HDAC6Q9UBN7 1215 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 SEL1LQ9UBV2 794 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 TRPC6Q9Y210 931 aa11.71□□□□□ -0.53
VPS33A-204ENST00000540669 LTBP2Q14767 1821 aa11.71□□□□□ -0.54
VPS33A-204ENST00000540669 NPHP3-ACAD11A0A0J9YXS1 232 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 A0A0U1RQG5 324 aaPredicted RBP11.7□□□□□ -0.54
VPS33A-204ENST00000540669 SMIM35A0A1B0GVV1 85 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 MAGEB2O15479 319 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 HIP1RO75146 1068 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 MAPTP10636 758 aaKnown RBP11.7□□□□□ -0.54
VPS33A-204ENST00000540669 AFMP43652 599 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 NCKAP1LP55160 1127 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 AMPD3Q01432 767 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 COASYQ13057 564 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 BMT2Q1RMZ1 405 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 CDCA2Q69YH5 1023 aaPredicted RBP11.7□□□□□ -0.54
VPS33A-204ENST00000540669 GDF6Q6KF10 455 aaPredicted RBP11.7□□□□□ -0.54
VPS33A-204ENST00000540669 NECAB2Q7Z6G3 386 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 EXOC8Q8IYI6 725 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 TRIML1Q8N9V2 468 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 KIAA0895Q8NCT3 520 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 SPIRE2Q8WWL2 714 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 KIFAP3Q92845 792 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 GLT1D1Q96MS3 346 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 JPH2Q9BR39 696 aaPredicted RBP11.7□□□□□ -0.54
VPS33A-204ENST00000540669 NFKBIZQ9BYH8 718 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 BLZF1Q9H2G9 400 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 GPRC5CQ9NQ84 441 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 SETD4Q9NVD3 440 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 ARHGAP28Q9P2N2 729 aa11.7□□□□□ -0.54
VPS33A-204ENST00000540669 ZMYM2Q9UBW7 1377 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 CD4P01730 458 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 RPN1P04843 607 aaKnown RBP11.69□□□□□ -0.54
VPS33A-204ENST00000540669 GAP43P17677 238 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 EN2P19622 333 aaPredicted RBP11.69□□□□□ -0.54
VPS33A-204ENST00000540669 GLRA2P23416 452 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 ZNF445P59923 1031 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 POU5F1BQ06416 359 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 TBC1D8BQ0IIM8 1120 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 ITGA7Q13683 1181 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 CAPSQ13938 189 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 ZSCAN23Q3MJ62 389 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 FOXR2Q6PJQ5 311 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 TRAF7Q6Q0C0 670 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 ANKRD33Q7Z3H0 272 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 FAM126BQ8IXS8 530 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 CKAP2LQ8IYA6 745 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 KIAA0319LQ8IZA0 1049 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 ASAP3Q8TDY4 903 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 DIS3LQ8TF46 1054 aaKnown RBP11.69□□□□□ -0.54
VPS33A-204ENST00000540669 SLC7A3Q8WY07 619 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 DHX38Q92620 1227 aaKnown RBP11.69□□□□□ -0.54
VPS33A-204ENST00000540669 ERCC4Q92889 916 aaPredicted RBP11.69□□□□□ -0.54
VPS33A-204ENST00000540669 WNT8BQ93098 351 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 SYAP1Q96A49 352 aaPredicted RBP11.69□□□□□ -0.54
VPS33A-204ENST00000540669 ZBTB10Q96DT7 871 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 CCDC34Q96HJ3 373 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 DRC1Q96MC2 740 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 FGFBP2Q9BYJ0 223 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 MAN1B1Q9UKM7 699 aa11.69□□□□□ -0.54
VPS33A-204ENST00000540669 C17orf102A2RUQ5 167 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 ARVCFO00192 962 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 TREHO43280 583 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 RPLP2P05387 115 aaKnown RBP11.68□□□□□ -0.54
VPS33A-204ENST00000540669 PLS3P13797 630 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 SCP2P22307 547 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 KLRC1P26715 233 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 NAMPTP43490 491 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 POLGP54098 1239 aaPredicted RBP11.68□□□□□ -0.54
VPS33A-204ENST00000540669 ASIC1P78348 528 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 MGAT3Q09327 533 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 CAMK4Q16566 473 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 KMT5BQ4FZB7 885 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 IER5Q5VY09 327 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 TAF2Q6P1X5 1199 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 RUFY4Q6ZNE9 571 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 TAS1R3Q7RTX0 852 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 SFR1Q86XK3 245 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 GLIS3Q8NEA6 775 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 CCDC113Q9H0I3 377 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 POLR3FQ9H1D9 316 aaPredicted RBP11.68□□□□□ -0.54
VPS33A-204ENST00000540669 PARVGQ9HBI0 331 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 STARD7Q9NQZ5 370 aa11.68□□□□□ -0.54
VPS33A-204ENST00000540669 HOOK1Q9UJC3 728 aaKnown RBP11.68□□□□□ -0.54
VPS33A-204ENST00000540669 UBE4BO95155 1302 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 CAND2O75155 1236 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 SMC2O95347 1197 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 SSBP05455 408 aaKnown RBP eCLIP11.67□□□□□ -0.54
VPS33A-204ENST00000540669 HOXD13P35453 343 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 NPTX2P47972 431 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 CLCN3P51790 818 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 CASP5P51878 434 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 ZNF200P98182 395 aaPredicted RBP11.67□□□□□ -0.54
VPS33A-204ENST00000540669 STK4Q13043 487 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 DHX8Q14562 1220 aaKnown RBP11.67□□□□□ -0.54
VPS33A-204ENST00000540669 TPRNQ4KMQ1 711 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 ZCWPW2Q504Y3 356 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 FAM26DQ5JW98 314 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 FAM26FQ5R3K3 315 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 DYMQ7RTS9 669 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms