RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 LSM12Q3MHD2 195 aaKnown RBP5.34□□□□□ -1.55
VPS13A-213ENST00000539950 SLFN12LQ6IEE8 588 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 ADGRE4PQ86SQ3 457 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 SGMS1Q86VZ5 419 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 D2HGDHQ8N465 521 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 KIAA1958Q8N8K9 716 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 SH3TC2Q8TF17 1288 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 CACTINQ8WUQ7 758 aaKnown RBP5.34□□□□□ -1.55
VPS13A-213ENST00000539950 RABGGTAQ92696 567 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 E2F7Q96AV8 911 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 C16orf92Q96LL3 132 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 PCIF1Q9H4Z3 704 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 ACSS2Q9NR19 701 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 DENND2AQ9ULE3 1009 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 CAPN14A8MX76 684 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 H7C1D1 291 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 ZNF202O95125 648 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 JMJD7P0C870 316 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 ADAM8P78325 824 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 HHEXQ03014 270 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 MYBPC3Q14896 1274 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 LPPQ93052 612 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 NKD2Q969F2 451 aaPredicted RBP5.33□□□□□ -1.56
VPS13A-213ENST00000539950 SLC7A6OSQ96CW6 309 aaPredicted RBP5.33□□□□□ -1.56
VPS13A-213ENST00000539950 MRFAP1L1Q96HT8 127 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 RPL10LQ96L21 214 aaKnown RBP5.33□□□□□ -1.56
VPS13A-213ENST00000539950 GPHA2Q96T91 129 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 ZSWIM4Q9H7M6 989 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 CABP5Q9NP86 173 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 B4GALT6Q9UBX8 382 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 SH3BP1Q9Y3L3 701 aa5.33□□□□□ -1.56
VPS13A-213ENST00000539950 RBM8AQ9Y5S9 174 aaKnown RBP5.33□□□□□ -1.56
VPS13A-213ENST00000539950 A0A1W2PRX2 142 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 CBX4O00257 560 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 H2AFYO75367 372 aaKnown RBP5.32□□□□□ -1.56
VPS13A-213ENST00000539950 ASMTLO95671 621 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 CYP17A1P05093 508 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 SLC9A1P19634 815 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 TCIRG1Q13488 830 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 FHL2Q14192 279 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 ZNF174Q15697 407 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 DGKDQ16760 1214 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 TTC38Q5R3I4 469 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 PRAMEF9Q5VWM5 478 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 CREB3L3Q68CJ9 461 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 ESRP1Q6NXG1 681 aaKnown RBP5.32□□□□□ -1.56
VPS13A-213ENST00000539950 GCDHQ92947 438 aaPredicted RBP5.32□□□□□ -1.56
VPS13A-213ENST00000539950 TUBGCP5Q96RT8 1024 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 SLC6A15Q9H2J7 730 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 KCMF1Q9P0J7 381 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 CEP72Q9P209 647 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 GIT1Q9Y2X7 761 aa5.32□□□□□ -1.56
VPS13A-213ENST00000539950 RANGAP1P46060 587 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-213ENST00000539950 SESN2P58004 480 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-213ENST00000539950 BPIFB4P59827 614 aa5.31□□□□□ -1.56
VPS13A-213ENST00000539950 ABHD18Q0P651 414 aa5.31□□□□□ -1.56
VPS13A-213ENST00000539950 PABPC4Q13310 644 aaKnown RBP eCLIP5.31□□□□□ -1.56
VPS13A-213ENST00000539950 EPHA7Q15375 998 aa5.31□□□□□ -1.56
VPS13A-213ENST00000539950 FNDC7Q5VTL7 733 aa5.31□□□□□ -1.56
VPS13A-213ENST00000539950 CDCA2Q69YH5 1023 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-213ENST00000539950 GAREM2Q75VX8 874 aa5.31□□□□□ -1.56
VPS13A-213ENST00000539950 ANKRD53Q8N9V6 530 aa5.31□□□□□ -1.56
VPS13A-213ENST00000539950 GFM2Q969S9 779 aaKnown RBP5.31□□□□□ -1.56
VPS13A-213ENST00000539950 DYDC2Q96IM9 177 aa5.31□□□□□ -1.56
VPS13A-213ENST00000539950 ELF4Q99607 663 aaPredicted RBP5.31□□□□□ -1.56
VPS13A-213ENST00000539950 MENTQ9BUN1 341 aa5.31□□□□□ -1.56
VPS13A-213ENST00000539950 TMEM260Q9NX78 707 aa5.31□□□□□ -1.56
VPS13A-213ENST00000539950 DNAI1Q9UI46 699 aa5.31□□□□□ -1.56
VPS13A-213ENST00000539950 KRTAP23-1A1A580 65 aa5.3□□□□□ -1.56
VPS13A-213ENST00000539950 RRP1BQ14684 758 aaKnown RBP5.3□□□□□ -1.56
VPS13A-213ENST00000539950 CCDC144BQ3MJ40 725 aa5.3□□□□□ -1.56
VPS13A-213ENST00000539950 UBE2R2Q712K3 238 aaPredicted RBP5.3□□□□□ -1.56
VPS13A-213ENST00000539950 CLEC14AQ86T13 490 aa5.3□□□□□ -1.56
VPS13A-213ENST00000539950 THEMISQ8N1K5 641 aaPredicted RBP5.3□□□□□ -1.56
VPS13A-213ENST00000539950 WDR92Q96MX6 357 aa5.3□□□□□ -1.56
VPS13A-213ENST00000539950 MPHOSPH9Q99550 1183 aa5.3□□□□□ -1.56
VPS13A-213ENST00000539950 ZNF703Q9H7S9 590 aaPredicted RBP5.3□□□□□ -1.56
VPS13A-213ENST00000539950 POLR3BQ9NW08 1133 aaPredicted RBP5.3□□□□□ -1.56
VPS13A-213ENST00000539950 H2AFY2Q9P0M6 372 aaPredicted RBP5.3□□□□□ -1.56
VPS13A-213ENST00000539950 RFPL3O75679 317 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 HNRNPLP14866 589 aaKnown RBP eCLIP5.29□□□□□ -1.56
VPS13A-213ENST00000539950 MCM7P33993 719 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 FLT3P36888 993 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 SCNN1GP51170 649 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 TUBA3CQ13748 450 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 CFAP100Q494V2 611 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 CRB2Q5IJ48 1285 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 TUBA3EQ6PEY2 450 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 UNQ6494/PRO21346Q6UXR6 183 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 Q6ZRM9 215 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 BMP8AQ7Z5Y6 402 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 TMPRSS6Q8IU80 811 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 HAPLN2Q9GZV7 340 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 SLITRK6Q9H5Y7 841 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 AURKAIP1Q9NWT8 199 aaPredicted RBP5.29□□□□□ -1.56
VPS13A-213ENST00000539950 OXSMQ9NWU1 459 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 SPO11Q9Y5K1 396 aa5.29□□□□□ -1.56
VPS13A-213ENST00000539950 UBE2QL1A1L167 161 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 GOLGA8BA8MQT2 603 aa5.28□□□□□ -1.56
VPS13A-213ENST00000539950 CYP27B1O15528 508 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms