RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 CRIPAKQ8N1N5 446 aa11.97□□□□□ -0.49
HMGA2-209ENST00000539662 IGSF22Q8N9C0 903 aa11.97□□□□□ -0.49
HMGA2-209ENST00000539662 TOP1MTQ969P6 601 aa11.97□□□□□ -0.49
HMGA2-209ENST00000539662 FDXACB1Q9BRP7 624 aaPredicted RBP11.97□□□□□ -0.49
HMGA2-209ENST00000539662 CLIC4Q9Y696 253 aa11.97□□□□□ -0.49
HMGA2-209ENST00000539662 AMHP03971 560 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 HTRA4P83105 476 aaPredicted RBP11.96□□□□□ -0.49
HMGA2-209ENST00000539662 PKP1Q13835 747 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 ADGRE1Q14246 886 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 EMC2Q15006 297 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 FOXD4L5Q5VV16 416 aaPredicted RBP11.96□□□□□ -0.49
HMGA2-209ENST00000539662 PPP2R2DQ66LE6 453 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 MAEAQ7L5Y9 396 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 KCNK18Q7Z418 384 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 ASAP3Q8TDY4 903 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 PRPF31Q8WWY3 499 aaKnown RBP11.96□□□□□ -0.49
HMGA2-209ENST00000539662 FOXD4L4Q8WXT5 416 aaPredicted RBP11.96□□□□□ -0.49
HMGA2-209ENST00000539662 APBB2Q92870 758 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 MAP7D2Q96T17 732 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 ZBED2Q9BTP6 218 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 POLR3CQ9BUI4 534 aaPredicted RBP11.96□□□□□ -0.49
HMGA2-209ENST00000539662 MINDY3Q9H8M7 445 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 SLC28A3Q9HAS3 691 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 GPRC5CQ9NQ84 441 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 LRWD1Q9UFC0 647 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 MTUS1Q9ULD2 1270 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 SQORQ9Y6N5 450 aa11.96□□□□□ -0.49
HMGA2-209ENST00000539662 MYH15Q9Y2K3 1946 aa11.96□□□□□ -0.5
HMGA2-209ENST00000539662 COL4A4P53420 1690 aaPredicted RBP11.95□□□□□ -0.5
HMGA2-209ENST00000539662 LINC01553A4QN01 128 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 VWA3AA6NCI4 1184 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 USO1O60763 962 aaKnown RBP11.95□□□□□ -0.5
HMGA2-209ENST00000539662 DKC1O60832 514 aaKnown RBP eCLIP11.95□□□□□ -0.5
HMGA2-209ENST00000539662 EFCAB14O75071 495 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 RPLP2P05387 115 aaKnown RBP11.95□□□□□ -0.5
HMGA2-209ENST00000539662 SRGAP2CP0DJJ0 459 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 DARSP14868 501 aaKnown RBP11.95□□□□□ -0.5
HMGA2-209ENST00000539662 EIF4BP23588 611 aaKnown RBP11.95□□□□□ -0.5
HMGA2-209ENST00000539662 RPA1P27694 616 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 TMOD1P28289 359 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 CCT6AP40227 531 aaKnown RBP11.95□□□□□ -0.5
HMGA2-209ENST00000539662 POLGP54098 1239 aaPredicted RBP11.95□□□□□ -0.5
HMGA2-209ENST00000539662 DSC3Q14574 896 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 SF3A1Q15459 793 aaKnown RBP11.95□□□□□ -0.5
HMGA2-209ENST00000539662 OTUD6AQ7L8S5 288 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 HSCBQ8IWL3 235 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 USP38Q8NB14 1042 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 NEK9Q8TD19 979 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 LRRC15Q8TF66 581 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 NLRP7Q8WX94 980 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 NLRP4Q96MN2 994 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 PNMA5Q96PV4 448 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 PLIN2Q99541 437 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 RAD9AQ99638 391 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 ADAM2Q99965 735 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 TSPYL2Q9H2G4 693 aaPredicted RBP11.95□□□□□ -0.5
HMGA2-209ENST00000539662 RC3H2Q9HBD1 1191 aaKnown RBP11.95□□□□□ -0.5
HMGA2-209ENST00000539662 IFT122Q9HBG6 1241 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 TUFT1Q9NNX1 390 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 ANKEF1Q9NU02 776 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 KIAA1671Q9BY89 1806 aa11.95□□□□□ -0.5
HMGA2-209ENST00000539662 NLRC5Q86WI3 1866 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 E9PMD0 336 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 STX6O43752 255 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 LINC00271P0C7V0 271 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 RFC5P40937 340 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 PRPHP41219 470 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 CEBPZQ03701 1054 aaKnown RBP11.94□□□□□ -0.5
HMGA2-209ENST00000539662 LAMTOR4Q0VGL1 99 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 PDIA5Q14554 519 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 PTPAQ15257 358 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 DTHD1Q6ZMT9 781 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 BRAPQ7Z569 592 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 SNX29Q8TEQ0 813 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 SLC7A3Q8WY07 619 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 ARNTL2Q8WYA1 636 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 MTRQ99707 1265 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 C17orf80Q9BSJ5 609 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 DDX19AQ9NUU7 478 aaKnown RBP11.94□□□□□ -0.5
HMGA2-209ENST00000539662 HCSTQ9UBK5 93 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 KIAA1024Q9UPX6 916 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 COL4A3BPQ9Y5P4 624 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 PRUNE2Q8WUY3 3088 aa11.94□□□□□ -0.5
HMGA2-209ENST00000539662 FNDC1Q4ZHG4 1894 aaPredicted RBP11.93□□□□□ -0.5
HMGA2-209ENST00000539662 TMEM265A0A087WTH1 108 aa11.93□□□□□ -0.5
HMGA2-209ENST00000539662 C9IYK1 514 aa11.93□□□□□ -0.5
HMGA2-209ENST00000539662 GPR182O15218 404 aa11.93□□□□□ -0.5
HMGA2-209ENST00000539662 LPXNO60711 386 aa11.93□□□□□ -0.5
HMGA2-209ENST00000539662 DGKIO75912 1065 aa11.93□□□□□ -0.5
HMGA2-209ENST00000539662 PDCP20941 246 aa11.93□□□□□ -0.5
HMGA2-209ENST00000539662 GLRA2P23416 452 aa11.93□□□□□ -0.5
HMGA2-209ENST00000539662 ARL2P36404 184 aa11.93□□□□□ -0.5
HMGA2-209ENST00000539662 DNM2P50570 870 aa11.93□□□□□ -0.5
HMGA2-209ENST00000539662 ZRSR1Q15695 479 aaKnown RBP11.93□□□□□ -0.5
HMGA2-209ENST00000539662 FAM102BQ5T8I3 360 aa11.93□□□□□ -0.5
HMGA2-209ENST00000539662 USP49Q70CQ1 688 aa11.93□□□□□ -0.5
HMGA2-209ENST00000539662 SP7Q8TDD2 431 aaPredicted RBP11.93□□□□□ -0.5
HMGA2-209ENST00000539662 BSNDQ8WZ55 320 aa11.93□□□□□ -0.5
HMGA2-209ENST00000539662 ZNF689Q96CS4 500 aaPredicted RBP11.93□□□□□ -0.5
HMGA2-209ENST00000539662 CHAMP1Q96JM3 812 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms