RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 CYP3A7-CYP3A51PA0A087WV96 503 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 TMEM150BA6NC51 233 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 M0R2N6 131 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 FSCN2O14926 492 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 ABCB7O75027 752 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 TDP2O95551 362 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 ZSCAN20P17040 1043 aaPredicted RBP9.54□□□□□ -0.88
USP28-203ENST00000537490 FGFR4P22455 802 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 CYP3A7P24462 503 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 TMOD1P28289 359 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 SFNP31947 248 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 JAK3P52333 1124 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 UBE3AQ05086 875 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 COASYQ13057 564 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 DRP2Q13474 957 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 TARBP2Q15633 366 aaKnown RBP9.54□□□□□ -0.88
USP28-203ENST00000537490 NPY5RQ15761 445 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 Q4G0T1 1027 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 B3GNT9Q6UX72 402 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 MIER3Q7Z3K6 550 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 ECHDC2Q86YB7 292 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 RNF135Q8IUD6 432 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 TRIM22Q8IYM9 498 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 THNSL1Q8IYQ7 743 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 BLIDQ8IZY5 108 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 VN1R2Q8NFZ6 395 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 ZNF274Q96GC6 653 aaPredicted RBP9.54□□□□□ -0.88
USP28-203ENST00000537490 CEP89Q96ST8 783 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 SH2D3AQ9BRG2 576 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 UPF3BQ9BZI7 483 aaKnown RBP9.54□□□□□ -0.88
USP28-203ENST00000537490 TMEM117Q9H0C3 514 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 TLR9Q9NR96 1032 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 MUTYHQ9UIF7 546 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 ATG2AQ2TAZ0 1938 aa9.54□□□□□ -0.88
USP28-203ENST00000537490 LOXHD1Q8IVV2 1947 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 CPLX1O14810 134 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 EPB41L2O43491 1005 aaKnown RBP9.53□□□□□ -0.88
USP28-203ENST00000537490 DTNBO60941 627 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 CSDE1O75534 798 aaKnown RBP9.53□□□□□ -0.88
USP28-203ENST00000537490 DEXIO95424 95 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 DARSP14868 501 aaKnown RBP9.53□□□□□ -0.88
USP28-203ENST00000537490 LAG3P18627 525 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 PBX3P40426 434 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 PLCB3Q01970 1234 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 TBC1D8BQ0IIM8 1120 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 STK3Q13188 491 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 DUSP6Q16828 381 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 DAGLBQ8NCG7 672 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 SMRP1Q8NCR6 262 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 MRPS27Q92552 414 aaKnown RBP9.53□□□□□ -0.88
USP28-203ENST00000537490 MBOAT7Q96N66 472 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 NIFKQ9BYG3 293 aaKnown RBP9.53□□□□□ -0.88
USP28-203ENST00000537490 C22orf23Q9BZE7 217 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 TM6SF1Q9BZW5 370 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 KCNJ14Q9UNX9 436 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 USP15Q9Y4E8 981 aaPredicted RBP9.53□□□□□ -0.88
USP28-203ENST00000537490 CYP46A1Q9Y6A2 500 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 EVPLQ92817 2033 aa9.53□□□□□ -0.88
USP28-203ENST00000537490 IGKV6-21A0A0C4DH24 114 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 A0A0U1RQF3 1178 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 HOXA2O43364 376 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 ATF7P17544 494 aaPredicted RBP9.52□□□□□ -0.89
USP28-203ENST00000537490 KCNC3Q14003 757 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 CSPP1Q1MSJ5 1256 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 INF2Q27J81 1249 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 MTERF2Q49AM1 385 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 XKR3Q5GH77 459 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 HERC4Q5GLZ8 1057 aaPredicted RBP9.52□□□□□ -0.89
USP28-203ENST00000537490 CLLU1OSQ5K130 101 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 PLPP4Q5VZY2 271 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 KCNT2Q6UVM3 1135 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 ZNF598Q86UK7 904 aaKnown RBP9.52□□□□□ -0.89
USP28-203ENST00000537490 ZNF710Q8N1W2 664 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 RNF169Q8NCN4 708 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 RDM1Q8NG50 284 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 ETNPPLQ8TBG4 499 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 NLRP7Q8WX94 980 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 SCLT1Q96NL6 688 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 POP1Q99575 1024 aaKnown RBP9.52□□□□□ -0.89
USP28-203ENST00000537490 PDRG1Q9NUG6 133 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 SEPT9Q9UHD8 586 aaPredicted RBP9.52□□□□□ -0.89
USP28-203ENST00000537490 LZTS1Q9Y250 596 aa9.52□□□□□ -0.89
USP28-203ENST00000537490 A0A087WZ62 844 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 DDX11L8A8MPP1 907 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 HIDE1A8MVS5 230 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 LOC730098B7Z3J9 87 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 EML1O00423 815 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 SLC37A4O43826 429 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 EOMESO95936 686 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 SCRN1Q12765 414 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 NONOQ15233 471 aaKnown RBP eCLIP9.51□□□□□ -0.89
USP28-203ENST00000537490 GALNT17Q6IS24 598 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 PDE12Q6L8Q7 609 aaKnown RBP9.51□□□□□ -0.89
USP28-203ENST00000537490 CPLX2Q6PUV4 134 aaKnown RBP9.51□□□□□ -0.89
USP28-203ENST00000537490 MOXD1Q6UVY6 613 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 HFE2Q6ZVN8 426 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 KSR1Q8IVT5 923 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 ABI1Q8IZP0 508 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 SLC39A11Q8N1S5 342 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 LRRC43Q8N309 656 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms