RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 GAS2O43903 313 aaKnown RBP22.13■■□□□ 1.13
CPSF1-209ENST00000532725 AMHP03971 560 aa22.13■■□□□ 1.13
CPSF1-209ENST00000532725 DARSP14868 501 aaKnown RBP22.13■■□□□ 1.13
CPSF1-209ENST00000532725 NFX1Q12986 1120 aaKnown RBP22.13■■□□□ 1.13
CPSF1-209ENST00000532725 Q7L0L9 218 aa22.13■■□□□ 1.13
CPSF1-209ENST00000532725 FAM228AQ86W67 206 aa22.13■■□□□ 1.13
CPSF1-209ENST00000532725 TCP11Q8WWU5 503 aa22.13■■□□□ 1.13
CPSF1-209ENST00000532725 TIFAQ96CG3 184 aa22.13■■□□□ 1.13
CPSF1-209ENST00000532725 MTRQ99707 1265 aa22.13■■□□□ 1.13
CPSF1-209ENST00000532725 TTYH1Q9H313 450 aaPredicted RBP22.13■■□□□ 1.13
CPSF1-209ENST00000532725 SEMA6BQ9H3T3 888 aa22.13■■□□□ 1.13
CPSF1-209ENST00000532725 BMP2KQ9NSY1 1161 aaPredicted RBP22.13■■□□□ 1.13
CPSF1-209ENST00000532725 LOXHD1Q8IVV2 1947 aa22.13■■□□□ 1.13
CPSF1-209ENST00000532725 A0A087WZ62 844 aa22.12■■□□□ 1.13
CPSF1-209ENST00000532725 GJB5O95377 273 aa22.12■■□□□ 1.13
CPSF1-209ENST00000532725 ZSCAN22P10073 491 aaPredicted RBP22.12■■□□□ 1.13
CPSF1-209ENST00000532725 ODR4Q5SWX8 454 aa22.12■■□□□ 1.13
CPSF1-209ENST00000532725 ZNF410Q86VK4 478 aa22.12■■□□□ 1.13
CPSF1-209ENST00000532725 MYOCDQ8IZQ8 938 aa22.12■■□□□ 1.13
CPSF1-209ENST00000532725 DEFB123Q8N688 67 aa22.12■■□□□ 1.13
CPSF1-209ENST00000532725 NLRP7Q8WX94 980 aa22.12■■□□□ 1.13
CPSF1-209ENST00000532725 PSPC1Q8WXF1 523 aaKnown RBP22.12■■□□□ 1.13
CPSF1-209ENST00000532725 LINC01599Q8WXQ3 324 aa22.12■■□□□ 1.13
CPSF1-209ENST00000532725 USP28Q96RU2 1077 aa22.12■■□□□ 1.13
CPSF1-209ENST00000532725 FDXACB1Q9BRP7 624 aaPredicted RBP22.12■■□□□ 1.13
CPSF1-209ENST00000532725 DDX19AQ9NUU7 478 aaKnown RBP22.12■■□□□ 1.13
CPSF1-209ENST00000532725 COL4A3BPQ9Y5P4 624 aa22.12■■□□□ 1.13
CPSF1-209ENST00000532725 MICAL3Q7RTP6 2002 aa22.11■■□□□ 1.13
CPSF1-209ENST00000532725 TMEM265A0A087WTH1 108 aa22.11■■□□□ 1.13
CPSF1-209ENST00000532725 ASAP2O43150 1006 aa22.11■■□□□ 1.13
CPSF1-209ENST00000532725 ARL2P36404 184 aa22.11■■□□□ 1.13
CPSF1-209ENST00000532725 GRIN1Q05586 938 aa22.11■■□□□ 1.13
CPSF1-209ENST00000532725 LAMTOR4Q0VGL1 99 aa22.11■■□□□ 1.13
CPSF1-209ENST00000532725 PKP1Q13835 747 aa22.11■■□□□ 1.13
CPSF1-209ENST00000532725 HYIQ5T013 277 aa22.11■■□□□ 1.13
CPSF1-209ENST00000532725 AK8Q96MA6 479 aa22.11■■□□□ 1.13
CPSF1-209ENST00000532725 GCOM2Q9BZD3 368 aaPredicted RBP22.11■■□□□ 1.13
CPSF1-209ENST00000532725 TSPYL2Q9H2G4 693 aaPredicted RBP22.11■■□□□ 1.13
CPSF1-209ENST00000532725 NKX2-4Q9H2Z4 354 aa22.11■■□□□ 1.13
CPSF1-209ENST00000532725 ATP6V0A4Q9HBG4 840 aa22.11■■□□□ 1.13
CPSF1-209ENST00000532725 IFT122Q9HBG6 1241 aa22.11■■□□□ 1.13
CPSF1-209ENST00000532725 MGEA5O60502 916 aa22.1■■□□□ 1.13
CPSF1-209ENST00000532725 CSDE1O75534 798 aaKnown RBP22.1■■□□□ 1.13
CPSF1-209ENST00000532725 CEBPZQ03701 1054 aaKnown RBP22.1■■□□□ 1.13
CPSF1-209ENST00000532725 ZNF697Q5TEC3 545 aa22.1■■□□□ 1.13
CPSF1-209ENST00000532725 FOXD4L5Q5VV16 416 aaPredicted RBP22.1■■□□□ 1.13
CPSF1-209ENST00000532725 PADI6Q6TGC4 694 aa22.1■■□□□ 1.13
CPSF1-209ENST00000532725 CRIPAKQ8N1N5 446 aa22.1■■□□□ 1.13
CPSF1-209ENST00000532725 FOXD4L4Q8WXT5 416 aaPredicted RBP22.1■■□□□ 1.13
CPSF1-209ENST00000532725 CCDC43Q96MW1 224 aaKnown RBP22.1■■□□□ 1.13
CPSF1-209ENST00000532725 SCLT1Q96NL6 688 aa22.1■■□□□ 1.13
CPSF1-209ENST00000532725 PNMA5Q96PV4 448 aa22.1■■□□□ 1.13
CPSF1-209ENST00000532725 RAD9AQ99638 391 aa22.1■■□□□ 1.13
CPSF1-209ENST00000532725 ZBED2Q9BTP6 218 aa22.1■■□□□ 1.13
CPSF1-209ENST00000532725 DNM3Q9UQ16 869 aa22.1■■□□□ 1.13
CPSF1-209ENST00000532725 MORC2Q9Y6X9 1032 aaPredicted RBP22.1■■□□□ 1.13
CPSF1-209ENST00000532725 E9PMD0 336 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 TLL1O43897 1013 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 USO1O60763 962 aaKnown RBP22.09■■□□□ 1.13
CPSF1-209ENST00000532725 SRGAP2CP0DJJ0 459 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 CYP11B2P19099 503 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 MARCKSP29966 332 aaPredicted RBP22.09■■□□□ 1.13
CPSF1-209ENST00000532725 LONP1P36776 959 aaKnown RBP22.09■■□□□ 1.13
CPSF1-209ENST00000532725 DSC3Q14574 896 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 MXD4Q14582 209 aaPredicted RBP22.09■■□□□ 1.13
CPSF1-209ENST00000532725 SLC39A14Q15043 492 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 FAM117BQ6P1L5 589 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 KCNK18Q7Z418 384 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 KCTD17Q8N5Z5 321 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 NLRP4Q96MN2 994 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 BHMT2Q9H2M3 363 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 ZNF576Q9H609 170 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 RGS18Q9NS28 235 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 MTMR10Q9NXD2 777 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 SRPRBQ9Y5M8 271 aaKnown RBP22.09■■□□□ 1.13
CPSF1-209ENST00000532725 PTPRSQ13332 1948 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 CHD9Q3L8U1 2897 aa22.09■■□□□ 1.13
CPSF1-209ENST00000532725 ARHGEF35A5YM69 484 aa22.08■■□□□ 1.13
CPSF1-209ENST00000532725 UPP2O95045 317 aa22.08■■□□□ 1.13
CPSF1-209ENST00000532725 EYA4O95677 639 aa22.08■■□□□ 1.13
CPSF1-209ENST00000532725 F13A1P00488 732 aa22.08■■□□□ 1.13
CPSF1-209ENST00000532725 FGFR4P22455 802 aa22.08■■□□□ 1.13
CPSF1-209ENST00000532725 NASPP49321 788 aaPredicted RBP22.08■■□□□ 1.13
CPSF1-209ENST00000532725 HTRA4P83105 476 aaPredicted RBP22.08■■□□□ 1.13
CPSF1-209ENST00000532725 GRB10Q13322 594 aa22.08■■□□□ 1.13
CPSF1-209ENST00000532725 BECN1Q14457 450 aa22.08■■□□□ 1.13
CPSF1-209ENST00000532725 ASAP3Q8TDY4 903 aa22.08■■□□□ 1.13
CPSF1-209ENST00000532725 ADAM2Q99965 735 aa22.08■■□□□ 1.13
CPSF1-209ENST00000532725 INO80BQ9C086 356 aaPredicted RBP22.08■■□□□ 1.13
CPSF1-209ENST00000532725 SLC28A3Q9HAS3 691 aa22.08■■□□□ 1.13
CPSF1-209ENST00000532725 FBXO2Q9UK22 296 aaPredicted RBP22.08■■□□□ 1.13
CPSF1-209ENST00000532725 INSL6Q9Y581 213 aa22.08■■□□□ 1.13
CPSF1-209ENST00000532725 TTC3P53804 2025 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 SLC26A4O43511 780 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 CA3P07451 260 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 GLRA2P23416 452 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 FAM189BP81408 668 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 POU5F1BQ06416 359 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 MAEAQ7L5Y9 396 aa22.07■■□□□ 1.12
CPSF1-209ENST00000532725 SRGAP1Q7Z6B7 1085 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms