RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 TDP2O95551 362 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 CYP3A7P24462 503 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 IRS1P35568 1242 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 FAM189BP81408 668 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 SMAD2Q15796 467 aaKnown RBP16.58■□□□□ 0.24
VPS28-215ENST00000531924 UGCGQ16739 394 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 MTERF2Q49AM1 385 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 XKR3Q5GH77 459 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 EFHBQ8N7U6 833 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 TMEM117Q9H0C3 514 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 ADAMTS10Q9H324 1103 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 TLR9Q9NR96 1032 aa16.58■□□□□ 0.24
VPS28-215ENST00000531924 FSD2A1L4K1 749 aa16.57■□□□□ 0.24
VPS28-215ENST00000531924 MBTPS2O43462 519 aa16.57■□□□□ 0.24
VPS28-215ENST00000531924 TBX10O75333 385 aa16.57■□□□□ 0.24
VPS28-215ENST00000531924 PSMD10O75832 226 aa16.57■□□□□ 0.24
VPS28-215ENST00000531924 DSC3Q14574 896 aa16.57■□□□□ 0.24
VPS28-215ENST00000531924 LETM2Q2VYF4 491 aa16.57■□□□□ 0.24
VPS28-215ENST00000531924 PDE12Q6L8Q7 609 aaKnown RBP16.57■□□□□ 0.24
VPS28-215ENST00000531924 ADGRD2Q7Z7M1 963 aa16.57■□□□□ 0.24
VPS28-215ENST00000531924 COLGALT1Q8NBJ5 622 aa16.57■□□□□ 0.24
VPS28-215ENST00000531924 DAGLBQ8NCG7 672 aa16.57■□□□□ 0.24
VPS28-215ENST00000531924 GCOM2Q9BZD3 368 aaPredicted RBP16.57■□□□□ 0.24
VPS28-215ENST00000531924 DACT1Q9NYF0 836 aa16.57■□□□□ 0.24
VPS28-215ENST00000531924 EDIL3O43854 480 aa16.56■□□□□ 0.24
VPS28-215ENST00000531924 SRGAP2BP0DMP2 458 aa16.56■□□□□ 0.24
VPS28-215ENST00000531924 DARSP14868 501 aaKnown RBP16.56■□□□□ 0.24
VPS28-215ENST00000531924 PLA2G5P39877 138 aa16.56■□□□□ 0.24
VPS28-215ENST00000531924 GPC3P51654 580 aa16.56■□□□□ 0.24
VPS28-215ENST00000531924 KRT17Q04695 432 aa16.56■□□□□ 0.24
VPS28-215ENST00000531924 INF2Q27J81 1249 aa16.56■□□□□ 0.24
VPS28-215ENST00000531924 MOXD1Q6UVY6 613 aa16.56■□□□□ 0.24
VPS28-215ENST00000531924 ECHDC2Q86YB7 292 aa16.56■□□□□ 0.24
VPS28-215ENST00000531924 LRRC43Q8N309 656 aa16.56■□□□□ 0.24
VPS28-215ENST00000531924 LINC01465Q8N7H1 131 aa16.56■□□□□ 0.24
VPS28-215ENST00000531924 AIFM3Q96NN9 605 aa16.56■□□□□ 0.24
VPS28-215ENST00000531924 JPH2Q9BR39 696 aaPredicted RBP16.56■□□□□ 0.24
VPS28-215ENST00000531924 NIFKQ9BYG3 293 aaKnown RBP16.56■□□□□ 0.24
VPS28-215ENST00000531924 KCNJ14Q9UNX9 436 aa16.56■□□□□ 0.24
VPS28-215ENST00000531924 PRR33A8MZF0 331 aa16.55■□□□□ 0.24
VPS28-215ENST00000531924 PER2O15055 1255 aa16.55■□□□□ 0.24
VPS28-215ENST00000531924 DKC1O60832 514 aaKnown RBP eCLIP16.55■□□□□ 0.24
VPS28-215ENST00000531924 SFPQP23246 707 aaKnown RBP eCLIP16.55■□□□□ 0.24
VPS28-215ENST00000531924 PPM1AP35813 382 aa16.55■□□□□ 0.24
VPS28-215ENST00000531924 PSMC5P62195 406 aa16.55■□□□□ 0.24
VPS28-215ENST00000531924 ZNF558Q96NG5 402 aa16.55■□□□□ 0.24
VPS28-215ENST00000531924 CDCA3Q99618 268 aaPredicted RBP16.55■□□□□ 0.24
VPS28-215ENST00000531924 NAP1L4Q99733 375 aaKnown RBP16.55■□□□□ 0.24
VPS28-215ENST00000531924 INO80BQ9C086 356 aaPredicted RBP16.55■□□□□ 0.24
VPS28-215ENST00000531924 C11orf16Q9NQ32 467 aa16.55■□□□□ 0.24
VPS28-215ENST00000531924 ENTPD7Q9NQZ7 604 aa16.55■□□□□ 0.24
VPS28-215ENST00000531924 SUCLA2Q9P2R7 463 aaPredicted RBP16.55■□□□□ 0.24
VPS28-215ENST00000531924 PCDHGC5Q9Y5F6 944 aa16.55■□□□□ 0.24
VPS28-215ENST00000531924 MYO7AQ13402 2215 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 C19orf67A6NJJ6 358 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 EOMESO95936 686 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 FGFR4P22455 802 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 ANKRD1Q15327 319 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 TARBP2Q15633 366 aaKnown RBP16.54■□□□□ 0.24
VPS28-215ENST00000531924 KCNT2Q6UVM3 1135 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 NEK8Q86SG6 692 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 RHPN2Q8IUC4 686 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 ETNPPLQ8TBG4 499 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 MRPS27Q92552 414 aaKnown RBP16.54■□□□□ 0.24
VPS28-215ENST00000531924 WASF1Q92558 559 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 MSLNLQ96KJ4 702 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 FAM20AQ96MK3 541 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 CASD1Q96PB1 797 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 CWH43Q9H720 699 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 HCSTQ9UBK5 93 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 BARX2Q9UMQ3 279 aaPredicted RBP16.54■□□□□ 0.24
VPS28-215ENST00000531924 LZTS1Q9Y250 596 aa16.54■□□□□ 0.24
VPS28-215ENST00000531924 MYH9P35579 1960 aaKnown RBP16.53■□□□□ 0.24
VPS28-215ENST00000531924 A0A0U1RQF3 1178 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 TMEM150BA6NC51 233 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 M0R2N6 131 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 CCNT1O60563 726 aaKnown RBP16.53■□□□□ 0.24
VPS28-215ENST00000531924 CSDE1O75534 798 aaKnown RBP16.53■□□□□ 0.24
VPS28-215ENST00000531924 GCFC2P16383 781 aaKnown RBP16.53■□□□□ 0.24
VPS28-215ENST00000531924 QARSP47897 775 aaKnown RBP16.53■□□□□ 0.24
VPS28-215ENST00000531924 ERVFC1P60507 584 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 SCRN1Q12765 414 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 COASYQ13057 564 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 BMS1Q14692 1282 aaKnown RBP16.53■□□□□ 0.24
VPS28-215ENST00000531924 PLPP4Q5VZY2 271 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 TWF2Q6IBS0 349 aaKnown RBP16.53■□□□□ 0.24
VPS28-215ENST00000531924 TMC7Q7Z402 723 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 EXOC8Q8IYI6 725 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 TMEM87AQ8NBN3 555 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 SLC7A3Q8WY07 619 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 MBOAT7Q96N66 472 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 TCF25Q9BQ70 676 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 SH2D3AQ9BRG2 576 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 MRPL9Q9BYD2 267 aaKnown RBP16.53■□□□□ 0.24
VPS28-215ENST00000531924 BRMS1Q9HCU9 246 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 NGRNQ9NPE2 291 aaKnown RBP16.53■□□□□ 0.24
VPS28-215ENST00000531924 CHST12Q9NRB3 414 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 SPG21Q9NZD8 308 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 CLEC1BQ9P126 229 aa16.53■□□□□ 0.24
VPS28-215ENST00000531924 ARIH1Q9Y4X5 557 aaPredicted RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms