RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PLCG1P19174 1290 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 ARL2P36404 184 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 ME1P48163 572 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 GPC3P51654 580 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 CRYBB1P53674 252 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-206ENST00000531480 POU5F1BQ06416 359 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 PLEKHG4Q58EX7 1191 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 TMEM240Q5SV17 173 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 RASIP1Q5U651 963 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 RESP18Q5W5W9 173 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 ZNF410Q86VK4 478 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 USP38Q8NB14 1042 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 SUCLA2Q9P2R7 463 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-206ENST00000531480 STK17AQ9UEE5 414 aa16.09■□□□□ 0.17
CPSF1-206ENST00000531480 M0QZ92 97 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 ASAP2O43150 1006 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 TXLNAP40222 546 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 LPIN1Q14693 890 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 E2F4Q16254 413 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 RINT1Q6NUQ1 792 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 PSRC1Q6PGN9 363 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-206ENST00000531480 IFNLR1Q8IU57 520 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-206ENST00000531480 PSPC1Q8WXF1 523 aaKnown RBP16.08■□□□□ 0.16
CPSF1-206ENST00000531480 RAD54LQ92698 747 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 CDK5RAP3Q96JB5 506 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 TIPINQ9BVW5 301 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 CDHR5Q9HBB8 845 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 CCDC39Q9UFE4 941 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 AKT3Q9Y243 479 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 COL4A3BPQ9Y5P4 624 aa16.08■□□□□ 0.16
CPSF1-206ENST00000531480 LAMA2P24043 3122 aaKnown RBP16.08■□□□□ 0.16
CPSF1-206ENST00000531480 MYH11P35749 1972 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 A0A1W2PPC1 479 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 A0A1W2PQ27 194 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 A0A1W2PQ64 194 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 A0A1W2PQD8 194 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 SOX1O00570 391 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-206ENST00000531480 USO1O60763 962 aaKnown RBP16.07■□□□□ 0.16
CPSF1-206ENST00000531480 PLA2G4BP0C869 781 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 NCLP19338 710 aaKnown RBP16.07■□□□□ 0.16
CPSF1-206ENST00000531480 CMA1P23946 247 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 GUCY2CP25092 1073 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 NLRP11P59045 1033 aaKnown RBP16.07■□□□□ 0.16
CPSF1-206ENST00000531480 TMEM62Q0P6H9 643 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 MXD4Q14582 209 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-206ENST00000531480 KIZQ2M2Z5 673 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 CCDC73Q6ZRK6 1079 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 CLEC17AQ6ZS10 378 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 TSHZ1Q6ZSZ6 1077 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 TMEM40Q8WWA1 233 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 PRPF31Q8WWY3 499 aaKnown RBP16.07■□□□□ 0.16
CPSF1-206ENST00000531480 HERVK_113Q902F9 699 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 LARP4BQ92615 738 aaKnown RBP16.07■□□□□ 0.16
CPSF1-206ENST00000531480 TMEM143Q96AN5 459 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 CCDC43Q96MW1 224 aaKnown RBP16.07■□□□□ 0.16
CPSF1-206ENST00000531480 PLIN2Q99541 437 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.07■□□□□ 0.162e-20■□□□□ 9.4
CPSF1-206ENST00000531480 RUSC1Q9BVN2 902 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 NFKBIZQ9BYH8 718 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 IFT122Q9HBG6 1241 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 HPSEQ9Y251 543 aa16.07■□□□□ 0.16
CPSF1-206ENST00000531480 PTPRSQ13332 1948 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 DARSP14868 501 aaKnown RBP16.06■□□□□ 0.16
CPSF1-206ENST00000531480 GLRA2P23416 452 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 EIF4BP23588 611 aaKnown RBP16.06■□□□□ 0.16
CPSF1-206ENST00000531480 LAMTOR4Q0VGL1 99 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 MAPK7Q13164 816 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 TCTN1Q2MV58 587 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 ARSHQ5FYA8 562 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 RRAGBQ5VZM2 374 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 CNKSR3Q6P9H4 555 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 ZNF365Q70YC5 407 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 DAW1Q8N136 415 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 ASAP3Q8TDY4 903 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 APBB2Q92870 758 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 LRCH3Q96II8 777 aa16.06■□□□□ 0.16
CPSF1-206ENST00000531480 UBE2OQ9C0C9 1292 aaKnown RBP16.06■□□□□ 0.16
CPSF1-206ENST00000531480 AGO3Q9H9G7 860 aaKnown RBP16.06■□□□□ 0.16
CPSF1-206ENST00000531480 BAIAP3O94812 1187 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 ACRP10323 421 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 GHRP10912 638 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 ZRSR1Q15695 479 aaKnown RBP16.05■□□□□ 0.16
CPSF1-206ENST00000531480 DEFB128Q7Z7B8 93 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 RHPN2Q8IUC4 686 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 DBF4BQ8NFT6 615 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 KIFAP3Q92845 792 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 KCNN1Q92952 543 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 OSMRQ99650 979 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 POLR3FQ9H1D9 316 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-206ENST00000531480 CUEDC2Q9H467 287 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 ERVK-5Q9HDB9 667 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 GPRC5CQ9NQ84 441 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 BMP2KQ9NSY1 1161 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-206ENST00000531480 LAMA3Q16787 3333 aa16.05■□□□□ 0.16
CPSF1-206ENST00000531480 A0A087WZ62 844 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 ABHD14A-ACY1A0A1B0GW23 586 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 FGBP02675 491 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 ZNF131P52739 623 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 PTENP60484 403 aa16.04■□□□□ 0.16
CPSF1-206ENST00000531480 CAPSQ13938 189 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms