RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CCT2P78371 535 aaKnown RBP4.2□□□□□ -1.74
CD44-229ENST00000528672 HTRA3P83110 453 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 PFKPQ01813 784 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 ADAM9Q13443 819 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 MYBPC3Q14896 1274 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 TERF2Q15554 542 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 CD276Q5ZPR3 534 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 RTN4RL1Q86UN2 441 aaPredicted RBP4.2□□□□□ -1.74
CD44-229ENST00000528672 TMEFF1Q8IYR6 380 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 CPA6Q8N4T0 437 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 EFHBQ8N7U6 833 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 C1orf162Q8NEQ5 155 aaPredicted RBP4.2□□□□□ -1.74
CD44-229ENST00000528672 CLIP3Q96DZ5 547 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 C16orf92Q96LL3 132 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 GBP4Q96PP9 640 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 TACO1Q9BSH4 297 aaKnown RBP4.2□□□□□ -1.74
CD44-229ENST00000528672 PRDM11Q9NQV5 511 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 CHST12Q9NRB3 414 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 MKS1Q9NXB0 559 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 DTLQ9NZJ0 730 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 HSPBP1Q9NZL4 362 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 RCAN3Q9UKA8 241 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 GIT1Q9Y2X7 761 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 NUB1Q9Y5A7 615 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 PCDHGA9Q9Y5G4 932 aaKnown RBP4.2□□□□□ -1.74
CD44-229ENST00000528672 PCDHGA8Q9Y5G5 932 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 PCDHGA7Q9Y5G6 932 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 PCDHGA6Q9Y5G7 932 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 PCDHGA3Q9Y5H0 932 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 PCDHGA2Q9Y5H1 932 aa4.2□□□□□ -1.74
CD44-229ENST00000528672 ADAMTS20P59510 1910 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 H7C1D1 291 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 FZD9O00144 591 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 KRIT1O00522 736 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 CLASP2O75122 1294 aaKnown RBP4.19□□□□□ -1.74
CD44-229ENST00000528672 NBPF7P0C2Y1 421 aaPredicted RBP4.19□□□□□ -1.74
CD44-229ENST00000528672 RBP3P10745 1247 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 VCAM1P19320 739 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 PI3P19957 117 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 CYP2C19P33261 490 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 FXR1P51114 621 aaKnown RBP eCLIP4.19□□□□□ -1.74
CD44-229ENST00000528672 ANTXR2P58335 489 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 PURAQ00577 322 aaKnown RBP4.19□□□□□ -1.74
CD44-229ENST00000528672 CACNB2Q08289 660 aaPredicted RBP4.19□□□□□ -1.74
CD44-229ENST00000528672 DBPQ10586 325 aaPredicted RBP4.19□□□□□ -1.74
CD44-229ENST00000528672 GTF2H3Q13889 308 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 ZNF174Q15697 407 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 VPS72Q15906 364 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 FIGNQ5HY92 759 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 CNKSR3Q6P9H4 555 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 SVIPQ8NHG7 77 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 TTLL11Q8NHH1 800 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 SLC39A13Q96H72 371 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 MSRAQ9UJ68 235 aa4.19□□□□□ -1.74
CD44-229ENST00000528672 SH3D21A4FU49 640 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 GOLGA8AA7E2F4 631 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 GOLGA8BA8MQT2 603 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 FOXP2O15409 715 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 IL33O95760 270 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 ADCY8P40145 1251 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 AFF3P51826 1226 aaKnown RBP4.18□□□□□ -1.74
CD44-229ENST00000528672 KRT85P78386 507 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 TRIM25Q14258 630 aaKnown RBP4.18□□□□□ -1.74
CD44-229ENST00000528672 LONRF3Q496Y0 759 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 ARHGAP29Q52LW3 1261 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 TMEM240Q5SV17 173 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 ETV3LQ6ZN32 361 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 ZC3H18Q86VM9 953 aaKnown RBP4.18□□□□□ -1.74
CD44-229ENST00000528672 RASSF3Q86WH2 238 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 LYSMD2Q8IV50 215 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 FAM126BQ8IXS8 530 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 SP8Q8IXZ3 490 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 AMOTL1Q8IY63 956 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 STPG3Q8N7X2 389 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 LINC00482Q8N8I6 264 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 LINC01356Q8N9X3 169 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 FBXO41Q8TF61 875 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 EAF2Q96CJ1 260 aaPredicted RBP4.18□□□□□ -1.74
CD44-229ENST00000528672 HSPBAP1Q96EW2 488 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 TOE1Q96GM8 510 aaKnown RBP4.18□□□□□ -1.74
CD44-229ENST00000528672 MYL10Q9BUA6 226 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 KCNH7Q9NS40 1196 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 ZBTB21Q9ULJ3 1066 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 JAG2Q9Y219 1238 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 PTPN22Q9Y2R2 807 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 NOC2LQ9Y3T9 749 aaKnown RBP4.18□□□□□ -1.74
CD44-229ENST00000528672 SPO11Q9Y5K1 396 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 PPP2R3BQ9Y5P8 575 aa4.18□□□□□ -1.74
CD44-229ENST00000528672 PRSS38A1L453 326 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 KLHL33A6NCF5 533 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 ERC2O15083 957 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 XPOTO43592 962 aaKnown RBP4.17□□□□□ -1.74
CD44-229ENST00000528672 KDM1AO60341 852 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 IFIT2P09913 472 aaKnown RBP4.17□□□□□ -1.74
CD44-229ENST00000528672 CYP2C8P10632 490 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 OSMP13725 252 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 TRIM27P14373 513 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 AOAHP28039 575 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 LSP1P33241 339 aa4.17□□□□□ -1.74
CD44-229ENST00000528672 GPR3P46089 330 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms