RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 PRPF3O43395 683 aaKnown RBP11.95□□□□□ -0.5
CPSF1-203ENST00000527916 ASGR2P07307 311 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 CPA1P15085 419 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 SMC1AQ14683 1233 aaKnown RBP11.95□□□□□ -0.5
CPSF1-203ENST00000527916 ANGPT1Q15389 498 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 ATAT1Q5SQI0 421 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 NIPA1Q7RTP0 329 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 CCDC105Q8IYK2 499 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 TMEM87AQ8NBN3 555 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 BRF1Q92994 677 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 ZNF558Q96NG5 402 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 RTP3Q9BQQ7 232 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 ZMYND12Q9H0C1 365 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 CWH43Q9H720 699 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 ERVK-5Q9HDB9 667 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 JPH1Q9HDC5 661 aaPredicted RBP11.95□□□□□ -0.5
CPSF1-203ENST00000527916 TMEM161AQ9NX61 479 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 DBR1Q9UK59 544 aaKnown RBP11.95□□□□□ -0.5
CPSF1-203ENST00000527916 USTQ9Y2C2 406 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 HCFC2Q9Y5Z7 792 aa11.95□□□□□ -0.5
CPSF1-203ENST00000527916 NFASCO94856 1347 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 C9IYK1 514 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 MEIS1O00470 390 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 LMNAP02545 664 aaKnown RBP11.94□□□□□ -0.5
CPSF1-203ENST00000527916 AOC1P19801 751 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 SREBF1P36956 1147 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 NTRK3Q16288 839 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 CEP55Q53EZ4 464 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 MTHFD1LQ6UB35 978 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 KCNT2Q6UVM3 1135 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 RUFY3Q7L099 469 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 PLPPR4Q7Z2D5 763 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 ABI1Q8IZP0 508 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 MRPL43Q8N983 215 aaKnown RBP11.94□□□□□ -0.5
CPSF1-203ENST00000527916 CCDC12Q8WUD4 166 aaPredicted RBP11.94□□□□□ -0.5
CPSF1-203ENST00000527916 ANO3Q9BYT9 981 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 TM6SF1Q9BZW5 370 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 TMEM117Q9H0C3 514 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 SMOC2Q9H3U7 446 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 ELAC1Q9H777 363 aaKnown RBP11.94□□□□□ -0.5
CPSF1-203ENST00000527916 ZSWIM6Q9HCJ5 1215 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 KCNH7Q9NS40 1196 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 DZANK1Q9NVP4 752 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 SPG21Q9NZD8 308 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 PKD2L1Q9P0L9 805 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 SLC9A2Q9UBY0 812 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 ST3GAL5Q9UNP4 418 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 SPTBN2O15020 2390 aa11.94□□□□□ -0.5
CPSF1-203ENST00000527916 MED19A0JLT2 244 aaPredicted RBP11.93□□□□□ -0.5
CPSF1-203ENST00000527916 MGEA5O60502 916 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 ATG7O95352 703 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 CYP3A4P08684 503 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 FGFR1P11362 822 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 IFNAR1P17181 557 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 GNA11P29992 359 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 PDIA3P30101 505 aaKnown RBP11.93□□□□□ -0.5
CPSF1-203ENST00000527916 CA8P35219 290 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 SLC26A2P50443 739 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 STAT5BP51692 787 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 FAM189BP81408 668 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 PUM1Q14671 1186 aaKnown RBP eCLIP11.93□□□□□ -0.5
CPSF1-203ENST00000527916 PLCB4Q15147 1175 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 KIAA1841Q6NSI8 718 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 LRRC43Q8N309 656 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 DTWD2Q8NBA8 298 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 TRAPPC12Q8WVT3 735 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 CRYGNQ8WXF5 182 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 ACSF2Q96CM8 615 aaPredicted RBP11.93□□□□□ -0.5
CPSF1-203ENST00000527916 RMDN1Q96DB5 314 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 SDF4Q9BRK5 362 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 RNF26Q9BY78 433 aaPredicted RBP11.93□□□□□ -0.5
CPSF1-203ENST00000527916 CYP26B1Q9NR63 512 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 PPP4R2Q9NY27 417 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 HCSTQ9UBK5 93 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 CDH22Q9UJ99 828 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 FBXL21Q9UKT6 434 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 NAP1L2Q9ULW6 460 aaPredicted RBP11.93□□□□□ -0.5
CPSF1-203ENST00000527916 NOC2LQ9Y3T9 749 aaKnown RBP11.93□□□□□ -0.5
CPSF1-203ENST00000527916 OTOGLQ3ZCN5 2332 aa11.93□□□□□ -0.5
CPSF1-203ENST00000527916 C2orf71A6NGG8 1288 aa11.92□□□□□ -0.5
CPSF1-203ENST00000527916 CLASP2O75122 1294 aaKnown RBP11.92□□□□□ -0.5
CPSF1-203ENST00000527916 EOMESO95936 686 aa11.92□□□□□ -0.5
CPSF1-203ENST00000527916 KLRC1P26715 233 aa11.92□□□□□ -0.5
CPSF1-203ENST00000527916 TDGQ13569 410 aa11.92□□□□□ -0.5
CPSF1-203ENST00000527916 RARS2Q5T160 578 aaKnown RBP11.92□□□□□ -0.5
CPSF1-203ENST00000527916 CWF19L1Q69YN2 538 aaKnown RBP11.92□□□□□ -0.5
CPSF1-203ENST00000527916 CYP2W1Q8TAV3 490 aa11.92□□□□□ -0.5
CPSF1-203ENST00000527916 ZNF274Q96GC6 653 aaPredicted RBP11.92□□□□□ -0.5
CPSF1-203ENST00000527916 PCYT2Q99447 389 aa11.92□□□□□ -0.5
CPSF1-203ENST00000527916 HINFPQ9BQA5 517 aa11.92□□□□□ -0.5
CPSF1-203ENST00000527916 AGO4Q9HCK5 861 aaKnown RBP11.92□□□□□ -0.5
CPSF1-203ENST00000527916 C6orf50Q9HD87 102 aa11.92□□□□□ -0.5
CPSF1-203ENST00000527916 SH3GLB2Q9NR46 395 aa11.92□□□□□ -0.5
CPSF1-203ENST00000527916 CYP46A1Q9Y6A2 500 aa11.92□□□□□ -0.5
CPSF1-203ENST00000527916 EVPLQ92817 2033 aa11.91□□□□□ -0.5
CPSF1-203ENST00000527916 STK25O00506 426 aa11.91□□□□□ -0.5
CPSF1-203ENST00000527916 PI15O43692 258 aa11.91□□□□□ -0.5
CPSF1-203ENST00000527916 CXCL14O95715 111 aa11.91□□□□□ -0.5
CPSF1-203ENST00000527916 WEE2P0C1S8 567 aa11.91□□□□□ -0.5
CPSF1-203ENST00000527916 ARP10275 920 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms