RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ERICH2A1L162 156 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 IQCA1LA6NCM1 817 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 TSPY2A6NKD2 308 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 CPLX1O14810 134 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 ZBTB43O43298 467 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 NRDCO43847 1150 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 ECEL1O95672 775 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 ALBP02768 609 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 ZSCAN22P10073 491 aaPredicted RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 PCP11498 1178 aaKnown RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 LIFRP42702 1097 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 EVCP57679 992 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 TFAP4Q01664 338 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 GUCY1B3Q02153 619 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 GSTM4Q03013 218 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 SART3Q15020 963 aaKnown RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 LONRF3Q496Y0 759 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 AXDND1Q5T1B0 1012 aaPredicted RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 IFIT1BQ5T764 474 aaKnown RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 MCTP1Q6DN14 999 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 CIAPIN1Q6FI81 312 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 C8orf86Q6ZUL3 223 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 ARHGAP27Q6ZUM4 889 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 CDC37L1Q7L3B6 337 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 CYFIP1Q7L576 1253 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 HDXQ7Z353 690 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 RNF180Q86T96 592 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 SGMS1Q86VZ5 419 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 IQCA1Q86XH1 822 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 CLEC10AQ8IUN9 316 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 RAVER1Q8IY67 606 aaKnown RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 FAM184AQ8NB25 1140 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 SMARCC2Q8TAQ2 1214 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 NUP133Q8WUM0 1156 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 TTC9Q92623 222 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 ANP32BQ92688 251 aaKnown RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 EXOC2Q96KP1 924 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 PRMT6Q96LA8 375 aaPredicted RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 GBP4Q96PP9 640 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 OSBPL5Q9H0X9 879 aaPredicted RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 VPS33BQ9H267 617 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 CCDC86Q9H6F5 360 aaKnown RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 MKNK2Q9HBH9 465 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 MAGEC2Q9UBF1 373 aaPredicted RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 GABBR1Q9UBS5 961 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 ZNF214Q9UL59 606 aaPredicted RBP4.78□□□□□ -1.64
CD44-226ENST00000527889 MTMR6Q9Y217 621 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 NID2Q14112 1375 aa4.78□□□□□ -1.64
CD44-226ENST00000527889 MGAMO43451 1857 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 ZNF541Q9H0D2 1346 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 FAM86C2PA6NEL3 165 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 DDTLA6NHG4 134 aaPredicted RBP4.77□□□□□ -1.65
CD44-226ENST00000527889 TCP10L2B9ZVM9 353 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 UBE2Q2LH0YL09 131 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 PLD2O14939 933 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 SH3BP5O60239 455 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 ZNF862O60290 1169 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 PLEKHA8P1O95397 391 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 TSPY3P0CV98 308 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 TSPY8P0CW00 308 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 FDPSP14324 419 aaKnown RBP4.77□□□□□ -1.65
CD44-226ENST00000527889 PDCP20941 246 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 AMPD1P23109 780 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 PMLP29590 882 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 L1CAMP32004 1257 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 SOX5P35711 763 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 TBX4P57082 545 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 HMGN5P82970 282 aaKnown RBP4.77□□□□□ -1.65
CD44-226ENST00000527889 SLC7A5Q01650 507 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 KCNMA1Q12791 1236 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 DLGAP5Q15398 846 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 NTRK3Q16288 839 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 SHROOM1Q2M3G4 852 aaPredicted RBP4.77□□□□□ -1.65
CD44-226ENST00000527889 OTUD7BQ6GQQ9 843 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 RCSD1Q6JBY9 416 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 GDF6Q6KF10 455 aaPredicted RBP4.77□□□□□ -1.65
CD44-226ENST00000527889 SYNE3Q6ZMZ3 975 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 C20orf204Q6ZNR8 217 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 RINLQ6ZS11 566 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 RASGRP2Q7LDG7 609 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 ZNF444Q8N0Y2 327 aaPredicted RBP4.77□□□□□ -1.65
CD44-226ENST00000527889 UBR7Q8N806 425 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 AGBL3Q8NEM8 1001 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 PHKBQ93100 1093 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 AIFM3Q96NN9 605 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 CLUHP3Q96NS8 147 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 LLPHQ9BRT6 129 aaKnown RBP4.77□□□□□ -1.65
CD44-226ENST00000527889 MRIQ9BWK5 157 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 SLC26A6Q9BXS9 759 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 VEZTQ9HBM0 779 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 ARHGEF4Q9NR80 690 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 IL17RBQ9NRM6 502 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 GJB4Q9NTQ9 266 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 ORC3Q9UBD5 711 aaPredicted RBP4.77□□□□□ -1.65
CD44-226ENST00000527889 ZNF70Q9UC06 446 aaPredicted RBP4.77□□□□□ -1.65
CD44-226ENST00000527889 HDAC9Q9UKV0 1011 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 SCAF8Q9UPN6 1271 aaKnown RBP4.77□□□□□ -1.65
CD44-226ENST00000527889 LOC285556D6RIA3 1793 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 PLIN4Q96Q06 1357 aa4.77□□□□□ -1.65
CD44-226ENST00000527889 PLXNB2O15031 1838 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms