RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 C8orf74Q6P047 294 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 C12orf56Q8IXR9 622 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 SYCP3Q8IZU3 236 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 SYTL5Q8TDW5 730 aaPredicted RBP16.73■□□□□ 0.27
USH1C-207ENST00000527720 LMBR1Q8WVP7 490 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 ZFP91Q96JP5 570 aaPredicted RBP16.73■□□□□ 0.27
USH1C-207ENST00000527720 AJAP1Q9UKB5 411 aaPredicted RBP16.73■□□□□ 0.27
USH1C-207ENST00000527720 ZHX2Q9Y6X8 837 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 DDX39AO00148 427 aaKnown RBP16.73■□□□□ 0.27
USH1C-207ENST00000527720 FTCDO95954 541 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 MYBL2P10244 700 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 ALAS1P13196 640 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 CYP2J2P51589 502 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 NPEPPSP55786 919 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 BFSP1Q12934 665 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 MTMR1Q13613 665 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 IL31RAQ8NI17 732 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 VTI1AQ96AJ9 217 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 RBM12Q9NTZ6 932 aaKnown RBP16.73■□□□□ 0.27
USH1C-207ENST00000527720 VPS18Q9P253 973 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 DMGDHQ9UI17 866 aaKnown RBP16.73■□□□□ 0.27
USH1C-207ENST00000527720 PPP1R9AQ9ULJ8 1098 aa16.73■□□□□ 0.27
USH1C-207ENST00000527720 F8VZ95 297 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 K7ENM7 598 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 ZMYND10O75800 440 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 H2AFZP0C0S5 128 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 EPHB4P54760 987 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 MRPS9P82933 396 aaKnown RBP16.72■□□□□ 0.27
USH1C-207ENST00000527720 ITGB3BPQ13352 177 aaPredicted RBP16.72■□□□□ 0.27
USH1C-207ENST00000527720 H2AFVQ71UI9 128 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 KSR1Q8IVT5 923 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 TAF4BQ92750 862 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 PBKQ96KB5 322 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 INPP4AQ96PE3 977 aaPredicted RBP16.72■□□□□ 0.27
USH1C-207ENST00000527720 TAOK3Q9H2K8 898 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 ST6GALNAC4Q9H4F1 302 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 ZC3H4Q9UPT8 1303 aaKnown RBP16.72■□□□□ 0.27
USH1C-207ENST00000527720 EXOC3O60645 756 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 N4BP1O75113 896 aaKnown RBP16.72■□□□□ 0.27
USH1C-207ENST00000527720 LMNB1P20700 586 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 BAG6P46379 1132 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 RARRES1P49788 294 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 RPS6KA1Q15418 735 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 EMBQ6PCB8 327 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 INTS8Q75QN2 995 aaKnown RBP16.72■□□□□ 0.27
USH1C-207ENST00000527720 LRRC57Q8N9N7 239 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 SLC17A8Q8NDX2 589 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 ACCSQ96QU6 501 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 IKZF4Q9H2S9 585 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 EHD2Q9NZN4 543 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 APEX2Q9UBZ4 518 aa16.72■□□□□ 0.27
USH1C-207ENST00000527720 COL11A1P12107 1806 aaPredicted RBP16.71■□□□□ 0.27
USH1C-207ENST00000527720 MAPK13O15264 365 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 P4HA2O15460 535 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 EVI5O60447 810 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 CLSTN1O94985 981 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 KRT13P13646 458 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 PLS3P13797 630 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 MATR3P43243 847 aaKnown RBP eCLIP16.71■□□□□ 0.27
USH1C-207ENST00000527720 MYL7Q01449 175 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 PGM5Q15124 567 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 C4orf19Q8IY42 314 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 CPXCR1Q8N123 301 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 SLC30A5Q8TAD4 765 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 HDAC7Q8WUI4 952 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 INTS2Q9H0H0 1204 aaKnown RBP16.71■□□□□ 0.27
USH1C-207ENST00000527720 RAVER2Q9HCJ3 691 aaKnown RBP16.71■□□□□ 0.27
USH1C-207ENST00000527720 DNAJC12Q9UKB3 198 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 FAN1Q9Y2M0 1017 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 KIAA1217Q5T5P2 1943 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 DDX3XO00571 662 aaKnown RBP eCLIP16.71■□□□□ 0.27
USH1C-207ENST00000527720 ZBED4O75132 1171 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 KIF4AO95239 1232 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 SFNP31947 248 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 JAK3P52333 1124 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 NNTQ13423 1086 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 CBWD6Q4V339 395 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 MUM1L1Q5H9M0 696 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 CBWD3Q5JTY5 395 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 CBWD5Q5RIA9 395 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 TAF3Q5VWG9 929 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 XRRA1Q6P2D8 792 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 GJB7Q6PEY0 223 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 SLFN11Q7Z7L1 901 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 SYCE1Q8N0S2 351 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 MS4A14Q96JA4 679 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 IWS1Q96ST2 819 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 SMARCAL1Q9NZC9 954 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 SAMM50Q9Y512 469 aa16.71■□□□□ 0.27
USH1C-207ENST00000527720 CTDP1Q9Y5B0 961 aaPredicted RBP16.71■□□□□ 0.27
USH1C-207ENST00000527720 NOP2P46087 812 aaKnown RBP16.7■□□□□ 0.26
USH1C-207ENST00000527720 RPS6P62753 249 aaKnown RBP16.7■□□□□ 0.26
USH1C-207ENST00000527720 DRAP1Q14919 205 aaPredicted RBP16.7■□□□□ 0.26
USH1C-207ENST00000527720 IFT20Q8IY31 132 aa16.7■□□□□ 0.26
USH1C-207ENST00000527720 TPCN2Q8NHX9 752 aa16.7■□□□□ 0.26
USH1C-207ENST00000527720 CAVIN3Q969G5 261 aa16.7■□□□□ 0.26
USH1C-207ENST00000527720 RLFQ13129 1914 aa16.7■□□□□ 0.26
USH1C-207ENST00000527720 SYF2O95926 243 aaKnown RBP16.7■□□□□ 0.26
USH1C-207ENST00000527720 VCAM1P19320 739 aa16.7■□□□□ 0.26
USH1C-207ENST00000527720 YWHABP31946 246 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms