RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 KRT14P02533 472 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 GNAI2P04899 355 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 MYBL1P10243 752 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 RARAP10276 462 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 ZNF18P17022 549 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 ENDOUP21128 410 aaKnown RBP6.29□□□□□ -1.4
CD44-225ENST00000527326 TMOD1P28289 359 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 HSPA9P38646 679 aaKnown RBP6.29□□□□□ -1.4
CD44-225ENST00000527326 VHLP40337 213 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 ZC3H6P61129 1189 aaKnown RBP6.29□□□□□ -1.4
CD44-225ENST00000527326 DMPKQ09013 629 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 NCOA4Q13772 614 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 NR1I3Q14994 352 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 NDUFA5Q16718 116 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 PLA2G4EQ3MJ16 856 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 GALNTL6Q49A17 601 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 ARSJQ5FYB0 599 aaPredicted RBP6.29□□□□□ -1.4
CD44-225ENST00000527326 WASHC2DQ5SRD0 308 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 FKBP15Q5T1M5 1219 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 TCERG1LQ5VWI1 586 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 CCDC174Q6PII3 467 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 FIGNL1Q6PIW4 674 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 SLC2A7Q6PXP3 512 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 BLOC1S2Q6QNY1 142 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 PIGWQ7Z7B1 504 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 TRIM50Q86XT4 487 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 PASD1Q8IV76 773 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 SLC7A5P1Q8MH63 180 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 MIGA1Q8NAN2 632 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.29□□□□□ -1.4
CD44-225ENST00000527326 C1orf216Q8TAB5 229 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 ENOX1Q8TC92 643 aaKnown RBP6.29□□□□□ -1.4
CD44-225ENST00000527326 GIMAP1Q8WWP7 306 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 RAPGEF5Q92565 580 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 CCT7Q99832 543 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 ZCCHC2Q9C0B9 1178 aaKnown RBP6.29□□□□□ -1.4
CD44-225ENST00000527326 CCDC68Q9H2F9 335 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 GGNBP2Q9H3C7 697 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 EPB41L1Q9H4G0 881 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 CLK4Q9HAZ1 481 aaKnown RBP6.29□□□□□ -1.4
CD44-225ENST00000527326 JADE2Q9NQC1 790 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 PFDN4Q9NQP4 134 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 NDFIP2Q9NV92 336 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 KIAA1522Q9P206 1035 aaPredicted RBP6.29□□□□□ -1.4
CD44-225ENST00000527326 STOML1Q9UBI4 398 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 SEL1LQ9UBV2 794 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 ZNF180Q9UJW8 692 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 INTUQ9ULD6 942 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 PCDHA7Q9UN72 937 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 PCDHGC4Q9Y5F7 938 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 NR2E3Q9Y5X4 410 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 PLEKHG1Q9ULL1 1385 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 KIDINS220Q9ULH0 1771 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 MAP3K15Q6ZN16 1313 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 KANSL1LA0AUZ9 987 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 UNCXA6NJT0 531 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 TBKBP1A7MCY6 615 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 TMEM229AB2RXF0 380 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 F8W031 263 aaPredicted RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 NVLO15381 856 aaKnown RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 TACC1O75410 805 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 TJP3O95049 919 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 ASMTLO95671 621 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 ATP1A1P05023 1023 aaKnown RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 ZFYP08048 801 aaPredicted RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 RASA1P20936 1047 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 AMPD1P23109 780 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 RPS6KB1P23443 525 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 CMA1P23946 247 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 RGS2P41220 211 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 HALP42357 657 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 MATR3P43243 847 aaKnown RBP eCLIP6.28□□□□□ -1.4
CD44-225ENST00000527326 NDUFA8P51970 172 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 KCNJ2P63252 427 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 KRT83P78385 493 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 OCRLQ01968 901 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 GUCY2DQ02846 1103 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 MECOMQ03112 1051 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 C2orf54Q08AI8 447 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 BNIP1Q12981 228 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 MTMR3Q13615 1198 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 EIF4A2Q14240 407 aaKnown RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 ARHGEF6Q15052 776 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 FXNQ16595 210 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 TWISTNBQ3B726 338 aaPredicted RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 LIN52Q52LA3 116 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 ERMARDQ5T6L9 678 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 CCDC102BQ68D86 513 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 UNC13DQ70J99 1090 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 ASRGL1Q7L266 308 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 NLRP9Q7RTR0 991 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 DAAM2Q86T65 1068 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 CROCCP3Q8IVE0 287 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 MYO1HQ8N1T3 1032 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 AGGF1Q8N302 714 aaeCLIP6.28□□□□□ -1.4
CD44-225ENST00000527326 PIGOQ8TEQ8 1089 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 ABTB1Q969K4 478 aaPredicted RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 SKA1Q96BD8 255 aa6.28□□□□□ -1.4
CD44-225ENST00000527326 LTV1Q96GA3 475 aaPredicted RBP6.28□□□□□ -1.4
CD44-225ENST00000527326 ZNF333Q96JL9 665 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms