RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 SIGLEC14Q08ET2 396 aa16.19■□□□□ 0.18
CPSF1-201ENST00000526271 SPOUT1Q5T280 376 aaKnown RBP16.19■□□□□ 0.18
CPSF1-201ENST00000526271 LLGL2Q6P1M3 1020 aa16.19■□□□□ 0.18
CPSF1-201ENST00000526271 SLC39A11Q8N1S5 342 aa16.19■□□□□ 0.18
CPSF1-201ENST00000526271 ZNF713Q8N859 430 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-201ENST00000526271 BCL7CQ8WUZ0 217 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-201ENST00000526271 KCNB2Q92953 911 aa16.19■□□□□ 0.18
CPSF1-201ENST00000526271 PPP2R3CQ969Q6 453 aa16.19■□□□□ 0.18
CPSF1-201ENST00000526271 TCF25Q9BQ70 676 aa16.19■□□□□ 0.18
CPSF1-201ENST00000526271 ZNF577Q9BSK1 485 aa16.19■□□□□ 0.18
CPSF1-201ENST00000526271 ATP6V0A4Q9HBG4 840 aa16.19■□□□□ 0.18
CPSF1-201ENST00000526271 DCHS1Q96JQ0 3298 aa16.19■□□□□ 0.18
CPSF1-201ENST00000526271 LAG3P18627 525 aa16.18■□□□□ 0.18
CPSF1-201ENST00000526271 ZNF76P36508 570 aa16.18■□□□□ 0.18
CPSF1-201ENST00000526271 GPC3P51654 580 aa16.18■□□□□ 0.18
CPSF1-201ENST00000526271 TARBP2Q15633 366 aaKnown RBP16.18■□□□□ 0.18
CPSF1-201ENST00000526271 PTPN21Q16825 1174 aa16.18■□□□□ 0.18
CPSF1-201ENST00000526271 EFCAB12Q6NXP0 572 aa16.18■□□□□ 0.18
CPSF1-201ENST00000526271 METTL13Q8N6R0 699 aa16.18■□□□□ 0.18
CPSF1-201ENST00000526271 TNPO1Q92973 898 aaKnown RBP16.18■□□□□ 0.18
CPSF1-201ENST00000526271 CDCA3Q99618 268 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-201ENST00000526271 POMKQ9H5K3 350 aa16.18■□□□□ 0.18
CPSF1-201ENST00000526271 PCDHA10Q9Y5I2 948 aa16.18■□□□□ 0.18
CPSF1-201ENST00000526271 HCFC2Q9Y5Z7 792 aa16.18■□□□□ 0.18
CPSF1-201ENST00000526271 PTPRZ1P23471 2315 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-201ENST00000526271 C2orf71A6NGG8 1288 aa16.17■□□□□ 0.18
CPSF1-201ENST00000526271 NT5C1B-RDH14C9J2C7 533 aa16.17■□□□□ 0.18
CPSF1-201ENST00000526271 MSH4O15457 936 aa16.17■□□□□ 0.18
CPSF1-201ENST00000526271 WEE2P0C1S8 567 aa16.17■□□□□ 0.18
CPSF1-201ENST00000526271 EIF4BP23588 611 aaKnown RBP16.17■□□□□ 0.18
CPSF1-201ENST00000526271 PRR16Q569H4 304 aa16.17■□□□□ 0.18
CPSF1-201ENST00000526271 BMP2KLQ5H9B9 411 aa16.17■□□□□ 0.18
CPSF1-201ENST00000526271 B3GNT9Q6UX72 402 aa16.17■□□□□ 0.18
CPSF1-201ENST00000526271 PHKBQ93100 1093 aa16.17■□□□□ 0.18
CPSF1-201ENST00000526271 VN1R3Q9BXE9 311 aa16.17■□□□□ 0.18
CPSF1-201ENST00000526271 AAASQ9NRG9 546 aa16.17■□□□□ 0.18
CPSF1-201ENST00000526271 FAM186AA6NE01 2351 aa16.17■□□□□ 0.18
CPSF1-201ENST00000526271 C2CD4DB7Z1M9 353 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 CLASP2O75122 1294 aaKnown RBP16.16■□□□□ 0.18
CPSF1-201ENST00000526271 DARSP14868 501 aaKnown RBP16.16■□□□□ 0.18
CPSF1-201ENST00000526271 AVPR2P30518 371 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 RCAN1P53805 252 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 PRKCEQ02156 737 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 SYNE3Q6ZMZ3 975 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 Q6ZUG5 572 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 SMAP1Q8IYB5 467 aaPredicted RBP16.16■□□□□ 0.18
CPSF1-201ENST00000526271 C12orf76Q8N812 135 aaPredicted RBP16.16■□□□□ 0.18
CPSF1-201ENST00000526271 MRPL43Q8N983 215 aaKnown RBP16.16■□□□□ 0.18
CPSF1-201ENST00000526271 HELQQ8TDG4 1101 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 AUTS2Q8WXX7 1259 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 SH2D3AQ9BRG2 576 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 AGXT2Q9BYV1 514 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 UNC45AQ9H3U1 944 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 TBC1D22BQ9NU19 505 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 GVINP1Q7Z2Y8 2422 aa16.16■□□□□ 0.18
CPSF1-201ENST00000526271 A0A0U1RQF3 1178 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 PRPF3O43395 683 aaKnown RBP16.15■□□□□ 0.18
CPSF1-201ENST00000526271 BRD1O95696 1058 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 OATP04181 439 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 PSAPP07602 524 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 PTPN5P54829 565 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 NPY5RQ15761 445 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 PDE12Q6L8Q7 609 aaKnown RBP16.15■□□□□ 0.18
CPSF1-201ENST00000526271 CKAP2LQ8IYA6 745 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 REXO1Q8N1G1 1221 aaKnown RBP16.15■□□□□ 0.18
CPSF1-201ENST00000526271 LRRC43Q8N309 656 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 SLC5A5Q92911 643 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 LPPQ93052 612 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 ZNF558Q96NG5 402 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 ENTPD7Q9NQZ7 604 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 AKT3Q9Y243 479 aa16.15■□□□□ 0.18
CPSF1-201ENST00000526271 IGKV6-21A0A0C4DH24 114 aa16.14■□□□□ 0.17
CPSF1-201ENST00000526271 METAP2P50579 478 aaKnown RBP eCLIP16.14■□□□□ 0.175e-7■□□□□ 9.3
CPSF1-201ENST00000526271 SETQ01105 290 aaPredicted RBP16.14■□□□□ 0.17
CPSF1-201ENST00000526271 FAM43BQ6ZT52 329 aaPredicted RBP16.14■□□□□ 0.17
CPSF1-201ENST00000526271 BRF1Q92994 677 aa16.14■□□□□ 0.17
CPSF1-201ENST00000526271 ZBP1Q9H171 429 aa16.14■□□□□ 0.17
CPSF1-201ENST00000526271 GLT8D2Q9H1C3 349 aa16.14■□□□□ 0.17
CPSF1-201ENST00000526271 NGRNQ9NPE2 291 aaKnown RBP16.14■□□□□ 0.17
CPSF1-201ENST00000526271 DISC1Q9NRI5 854 aa16.14■□□□□ 0.17
CPSF1-201ENST00000526271 SPG21Q9NZD8 308 aa16.14■□□□□ 0.17
CPSF1-201ENST00000526271 VPS54Q9P1Q0 977 aa16.14■□□□□ 0.17
CPSF1-201ENST00000526271 SNX14Q9Y5W7 946 aa16.14■□□□□ 0.17
CPSF1-201ENST00000526271 M0R2N6 131 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 MAGEB2O15479 319 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 PSMD10O75832 226 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 ASGR2P07307 311 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 EPCAMP16422 314 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 AFF1P51825 1210 aaKnown RBP16.13■□□□□ 0.17
CPSF1-201ENST00000526271 RNF20Q5VTR2 975 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 TMEM105Q8N8V8 129 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 RNF169Q8NCN4 708 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 KREMEN2Q8NCW0 462 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 SLC22A17Q8WUG5 538 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 RIPOR3Q96MK2 946 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 ADAM7Q9H2U9 754 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 NCOA5Q9HCD5 579 aaKnown RBP16.13■□□□□ 0.17
CPSF1-201ENST00000526271 DOCK8Q8NF50 2099 aa16.13■□□□□ 0.17
CPSF1-201ENST00000526271 ZNF292O60281 2723 aa16.12■□□□□ 0.17
CPSF1-201ENST00000526271 WDR64B1ANS9 1081 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms