RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 ADAMTS10Q9H324 1103 aa7.45□□□□□ -1.22
CD44-221ENST00000526000 POMKQ9H5K3 350 aa7.45□□□□□ -1.22
CD44-221ENST00000526000 NRBP2Q9NSY0 501 aa7.45□□□□□ -1.22
CD44-221ENST00000526000 RBM28Q9NW13 759 aaKnown RBP7.45□□□□□ -1.22
CD44-221ENST00000526000 BARHL2Q9NY43 387 aa7.45□□□□□ -1.22
CD44-221ENST00000526000 INPP5FQ9Y2H2 1132 aa7.45□□□□□ -1.22
CD44-221ENST00000526000 ZDBF2Q9HCK1 2354 aa7.45□□□□□ -1.22
CD44-221ENST00000526000 IGLV3-22A0A075B6J6 115 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 C2orf71A6NGG8 1288 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 SPDYE4A6NLX3 237 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 ST18O60284 1047 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 ZNF862O60290 1169 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 DTNBO60941 627 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 SSBP05455 408 aaKnown RBP eCLIP7.44□□□□□ -1.22
CD44-221ENST00000526000 EPCAMP16422 314 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 CLK2P49760 499 aaKnown RBP7.44□□□□□ -1.22
CD44-221ENST00000526000 SLC26A2P50443 739 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 BCAR1P56945 870 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 PLCB3Q01970 1234 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 KCNC3Q14003 757 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 UGCGQ16739 394 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 MTERF2Q49AM1 385 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 PDE12Q6L8Q7 609 aaKnown RBP7.44□□□□□ -1.22
CD44-221ENST00000526000 CES5AQ6NT32 575 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 TMC5Q6UXY8 1006 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 SGMS1Q86VZ5 419 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 VPS52Q8N1B4 723 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 SLC39A11Q8N1S5 342 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 MRPL43Q8N983 215 aaKnown RBP7.44□□□□□ -1.22
CD44-221ENST00000526000 FLCNQ8NFG4 579 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 ST13P5Q8NFI4 369 aaPredicted RBP7.44□□□□□ -1.22
CD44-221ENST00000526000 NLRP7Q8WX94 980 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 BBXQ8WY36 941 aaPredicted RBP7.44□□□□□ -1.22
CD44-221ENST00000526000 MAP7D2Q96T17 732 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 CDCA3Q99618 268 aaPredicted RBP7.44□□□□□ -1.22
CD44-221ENST00000526000 LARP6Q9BRS8 491 aaKnown RBP7.44□□□□□ -1.22
CD44-221ENST00000526000 C6orf50Q9HD87 102 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 NGRNQ9NPE2 291 aaKnown RBP7.44□□□□□ -1.22
CD44-221ENST00000526000 DISC1Q9NRI5 854 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 PCDHA10Q9Y5I2 948 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 MAFBQ9Y5Q3 323 aaPredicted RBP7.44□□□□□ -1.22
CD44-221ENST00000526000 HCFC2Q9Y5Z7 792 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 NLRC5Q86WI3 1866 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 COL4A6Q14031 1691 aa7.44□□□□□ -1.22
CD44-221ENST00000526000 LAMA4Q16363 1823 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 A0A087WZ62 844 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.43□□□□□ -1.22
CD44-221ENST00000526000 MEIS3P2A8K0S8 358 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 DDX11L8A8MPP1 907 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 STK25O00506 426 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 MAGEB2O15479 319 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 EDIL3O43854 480 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 ZC3H11AO75152 810 aaKnown RBP eCLIP7.43□□□□□ -1.22
CD44-221ENST00000526000 CYP3A4P08684 503 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 SRGAP2BP0DMP2 458 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 DARSP14868 501 aaKnown RBP7.43□□□□□ -1.22
CD44-221ENST00000526000 EIF4BP23588 611 aaKnown RBP7.43□□□□□ -1.22
CD44-221ENST00000526000 TMOD1P28289 359 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 ALDH7A1P49419 539 aaKnown RBP7.43□□□□□ -1.22
CD44-221ENST00000526000 GPC3P51654 580 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 CCT2P78371 535 aaKnown RBP7.43□□□□□ -1.22
CD44-221ENST00000526000 AP3B2Q13367 1082 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 SMC1AQ14683 1233 aaKnown RBP7.43□□□□□ -1.22
CD44-221ENST00000526000 PKN1Q16512 942 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 TPRNQ4KMQ1 711 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 ATAT1Q5SQI0 421 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 RNF20Q5VTR2 975 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 ZNF746Q6NUN9 644 aaPredicted RBP7.43□□□□□ -1.22
CD44-221ENST00000526000 TMEM184AQ6ZMB5 413 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 Q6ZUG5 572 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 ASCL5Q7RTU5 278 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 TMEM173Q86WV6 379 aaPredicted RBP7.43□□□□□ -1.22
CD44-221ENST00000526000 KSR1Q8IVT5 923 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 TMEM105Q8N8V8 129 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 CASP10Q92851 521 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 SNX27Q96L92 541 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 FDXACB1Q9BRP7 624 aaPredicted RBP7.43□□□□□ -1.22
CD44-221ENST00000526000 ADAM7Q9H2U9 754 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 MFSD1Q9H3U5 465 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 ELAC1Q9H777 363 aaKnown RBP7.43□□□□□ -1.22
CD44-221ENST00000526000 TBC1D22BQ9NU19 505 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 RNF216Q9NWF9 866 aaPredicted RBP7.43□□□□□ -1.22
CD44-221ENST00000526000 DBR1Q9UK59 544 aaKnown RBP7.43□□□□□ -1.22
CD44-221ENST00000526000 COL1A2P08123 1366 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 ZNF318Q5VUA4 2279 aa7.43□□□□□ -1.22
CD44-221ENST00000526000 MYO10Q9HD67 2058 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 A0A0U1RQF3 1178 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 C2CD2LO14523 706 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 MSH4O15457 936 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 HOXA2O43364 376 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 PI15O43692 258 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 OATP04181 439 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 HOXB8P17481 243 aaPredicted RBP7.42□□□□□ -1.22
CD44-221ENST00000526000 NLRP5P59047 1200 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 AKAP17AQ02040 695 aaKnown RBP7.42□□□□□ -1.22
CD44-221ENST00000526000 PRKCEQ02156 737 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 RNASELQ05823 741 aaKnown RBP7.42□□□□□ -1.22
CD44-221ENST00000526000 TBC1D8BQ0IIM8 1120 aa7.42□□□□□ -1.22
CD44-221ENST00000526000 PFKFB3Q16875 520 aaPredicted RBP7.42□□□□□ -1.22
CD44-221ENST00000526000 TWF2Q6IBS0 349 aaKnown RBP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms