RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 ARHGEF35A5YM69 484 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 PITPNM1O00562 1244 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 MAFO75444 373 aaPredicted RBP17.01■□□□□ 0.31
LSM1-203ENST00000520755 SSBP05455 408 aaKnown RBP eCLIP17.01■□□□□ 0.31
LSM1-203ENST00000520755 RFC5P40937 340 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 TMEM62Q0P6H9 643 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 ZNF618Q5T7W0 954 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 RINT1Q6NUQ1 792 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 C1orf186Q6ZWK4 172 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 RSPH3Q86UC2 560 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 GPBP1Q86WP2 473 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 SLC7A3Q8WY07 619 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 ERCC4Q92889 916 aaPredicted RBP17.01■□□□□ 0.31
LSM1-203ENST00000520755 BADQ92934 168 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 SCLYQ96I15 445 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 LBHD1Q9BQE6 289 aaPredicted RBP17.01■□□□□ 0.31
LSM1-203ENST00000520755 TRIM9Q9C026 710 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 WNT8AQ9H1J5 351 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 XPNPEP1Q9NQW7 623 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 PPME1Q9Y570 386 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 PDE4DIPQ5VU43 2346 aa17.01■□□□□ 0.31
LSM1-203ENST00000520755 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17■□□□□ 0.31
LSM1-203ENST00000520755 NPHP3-ACAD11A0A0J9YXS1 232 aa17■□□□□ 0.31
LSM1-203ENST00000520755 TRAK2O60296 914 aa17■□□□□ 0.31
LSM1-203ENST00000520755 USO1O60763 962 aaKnown RBP17■□□□□ 0.31
LSM1-203ENST00000520755 SELPP16109 830 aa17■□□□□ 0.31
LSM1-203ENST00000520755 TMOD1P28289 359 aa17■□□□□ 0.31
LSM1-203ENST00000520755 MAPK7Q13164 816 aa17■□□□□ 0.31
LSM1-203ENST00000520755 PNOCQ13519 176 aa17■□□□□ 0.31
LSM1-203ENST00000520755 CUL4BQ13620 913 aa17■□□□□ 0.31
LSM1-203ENST00000520755 EMC2Q15006 297 aa17■□□□□ 0.31
LSM1-203ENST00000520755 PADI6Q6TGC4 694 aa17■□□□□ 0.31
LSM1-203ENST00000520755 SV2BQ7L1I2 683 aa17■□□□□ 0.31
LSM1-203ENST00000520755 LRRC8DQ7L1W4 858 aa17■□□□□ 0.31
LSM1-203ENST00000520755 KIAA0319LQ8IZA0 1049 aa17■□□□□ 0.31
LSM1-203ENST00000520755 DNAJC19Q96DA6 116 aa17■□□□□ 0.31
LSM1-203ENST00000520755 MAP7D2Q96T17 732 aa17■□□□□ 0.31
LSM1-203ENST00000520755 PPP1R16BQ96T49 567 aa17■□□□□ 0.31
LSM1-203ENST00000520755 JPH2Q9BR39 696 aaPredicted RBP17■□□□□ 0.31
LSM1-203ENST00000520755 NUP62CLQ9H1M0 184 aa17■□□□□ 0.31
LSM1-203ENST00000520755 BLZF1Q9H2G9 400 aa17■□□□□ 0.31
LSM1-203ENST00000520755 DHX33Q9H6R0 707 aaKnown RBP17■□□□□ 0.31
LSM1-203ENST00000520755 AKT3Q9Y243 479 aa17■□□□□ 0.31
LSM1-203ENST00000520755 IGKV6-21A0A0C4DH24 114 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 GTPBP6O43824 516 aaPredicted RBP16.99■□□□□ 0.31
LSM1-203ENST00000520755 CAND2O75155 1236 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 VTNP04004 478 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 IQCF3P0C7M6 154 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 MRPS6P82932 125 aaKnown RBP16.99■□□□□ 0.31
LSM1-203ENST00000520755 CACNB1Q02641 598 aaPredicted RBP16.99■□□□□ 0.31
LSM1-203ENST00000520755 RBL2Q08999 1139 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 DPYDQ12882 1025 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 DRP2Q13474 957 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 POSTNQ15063 836 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 CAMK4Q16566 473 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 MFSD5Q6N075 450 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 CAVIN1Q6NZI2 390 aaKnown RBP16.99■□□□□ 0.31
LSM1-203ENST00000520755 CNNM4Q6P4Q7 775 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 ELOA2Q8IYF1 753 aaPredicted RBP16.99■□□□□ 0.31
LSM1-203ENST00000520755 EXOC8Q8IYI6 725 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 DAW1Q8N136 415 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 TMEM199Q8N511 208 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 LINC01465Q8N7H1 131 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 TMEM143Q96AN5 459 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 C7orf25Q9BPX7 421 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 REEP2Q9BRK0 252 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 ATP6V0A4Q9HBG4 840 aa16.99■□□□□ 0.31
LSM1-203ENST00000520755 RSPH10B2B2RC85 870 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 M0QZ92 97 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 KLRC4O43908 158 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 DGAT1O75907 488 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 RPLP2P05387 115 aaKnown RBP16.98■□□□□ 0.31
LSM1-203ENST00000520755 RSPH10BP0C881 870 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 GUCY2CP25092 1073 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 MAGEA10P43363 369 aaPredicted RBP16.98■□□□□ 0.31
LSM1-203ENST00000520755 DNM2P50570 870 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 RAD51AP2Q09MP3 1159 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 MKRN4PQ13434 485 aaPredicted RBP16.98■□□□□ 0.31
LSM1-203ENST00000520755 GIT2Q14161 759 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 IER5Q5VY09 327 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 TRAF7Q6Q0C0 670 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 RBM43Q6ZSC3 357 aaKnown RBP16.98■□□□□ 0.31
LSM1-203ENST00000520755 MAEAQ7L5Y9 396 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 RPAINQ86UA6 219 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 NME8Q8N427 588 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 DDX12PQ92771 950 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 SUCLA2Q9P2R7 463 aaPredicted RBP16.98■□□□□ 0.31
LSM1-203ENST00000520755 GINS2Q9Y248 185 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 CDY2AQ9Y6F7 541 aa16.98■□□□□ 0.31
LSM1-203ENST00000520755 FRMD3A2A2Y4 597 aa16.97■□□□□ 0.31
LSM1-203ENST00000520755 RBAK-RBAKDNI3L0D1 243 aa16.97■□□□□ 0.31
LSM1-203ENST00000520755 CHRNA1P02708 482 aa16.97■□□□□ 0.31
LSM1-203ENST00000520755 CSF2RAP15509 400 aa16.97■□□□□ 0.31
LSM1-203ENST00000520755 FPGSQ05932 587 aa16.97■□□□□ 0.31
LSM1-203ENST00000520755 SKOR2Q2VWA4 1001 aaPredicted RBP16.97■□□□□ 0.31
LSM1-203ENST00000520755 CCDC183Q5T5S1 534 aa16.97■□□□□ 0.31
LSM1-203ENST00000520755 KANK3Q6NY19 840 aa16.97■□□□□ 0.31
LSM1-203ENST00000520755 DYMQ7RTS9 669 aa16.97■□□□□ 0.31
LSM1-203ENST00000520755 DEFB128Q7Z7B8 93 aa16.97■□□□□ 0.31
LSM1-203ENST00000520755 SPATA20Q8TB22 786 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms