RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 ACO2Q99798 780 aaKnown RBP9.41□□□□□ -0.9
LSM1-202ENST00000520286 SLC39A2Q9NP94 309 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 HSPBP1Q9NZL4 362 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 DNM3Q9UQ16 869 aa9.41□□□□□ -0.9
LSM1-202ENST00000520286 ANO9A1A5B4 782 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 APAF1O14727 1248 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 PCDH8O95206 1070 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 MYBP10242 640 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 PDCP20941 246 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 MAPKAPK2P49137 400 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 ADGRF1Q5T601 910 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 CYB5RLQ6IPT4 315 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 TEPPQ6URK8 271 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 USP45Q70EL2 814 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 CHST15Q7LFX5 561 aaPredicted RBP9.4□□□□□ -0.9
LSM1-202ENST00000520286 ZBTB34Q8NCN2 500 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 DIS3LQ8TF46 1054 aaKnown RBP9.4□□□□□ -0.9
LSM1-202ENST00000520286 RSAD2Q8WXG1 361 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 ACE2Q9BYF1 805 aaPredicted RBP9.4□□□□□ -0.9
LSM1-202ENST00000520286 BCAS3Q9H6U6 928 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 INCENPQ9NQS7 918 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 DDX21Q9NR30 783 aaKnown RBP eCLIP9.4□□□□□ -0.9
LSM1-202ENST00000520286 PRSS50Q9UI38 385 aa9.4□□□□□ -0.9
LSM1-202ENST00000520286 ENO2P09104 434 aaPredicted RBP9.39□□□□□ -0.91
LSM1-202ENST00000520286 FXR1P51114 621 aaKnown RBP eCLIP9.39□□□□□ -0.91
LSM1-202ENST00000520286 USP14P54578 494 aa9.39□□□□□ -0.91
LSM1-202ENST00000520286 CCT2P78371 535 aaKnown RBP9.39□□□□□ -0.91
LSM1-202ENST00000520286 NOLC1Q14978 699 aaKnown RBP eCLIP9.39□□□□□ -0.91
LSM1-202ENST00000520286 VPS72Q15906 364 aa9.39□□□□□ -0.91
LSM1-202ENST00000520286 ANO4Q32M45 955 aa9.39□□□□□ -0.91
LSM1-202ENST00000520286 PLEKHN1Q494U1 663 aaPredicted RBP9.39□□□□□ -0.91
LSM1-202ENST00000520286 SLC41A1Q8IVJ1 513 aa9.39□□□□□ -0.91
LSM1-202ENST00000520286 OR14C36Q8NHC7 312 aa9.39□□□□□ -0.91
LSM1-202ENST00000520286 RPGRQ92834 1020 aaKnown RBP9.39□□□□□ -0.91
LSM1-202ENST00000520286 FAM193BQ96PV7 902 aaPredicted RBP9.39□□□□□ -0.91
LSM1-202ENST00000520286 AMNQ9BXJ7 453 aa9.39□□□□□ -0.91
LSM1-202ENST00000520286 DENND2AQ9ULE3 1009 aa9.39□□□□□ -0.91
LSM1-202ENST00000520286 PTPN22Q9Y2R2 807 aa9.39□□□□□ -0.91
LSM1-202ENST00000520286 THBS2P35442 1172 aa9.38□□□□□ -0.91
LSM1-202ENST00000520286 STAT5AP42229 794 aa9.38□□□□□ -0.91
LSM1-202ENST00000520286 BCAR1P56945 870 aa9.38□□□□□ -0.91
LSM1-202ENST00000520286 ZC3H14Q6PJT7 736 aaKnown RBP9.38□□□□□ -0.91
LSM1-202ENST00000520286 ETV3LQ6ZN32 361 aa9.38□□□□□ -0.91
LSM1-202ENST00000520286 MVB12AQ96EY5 273 aa9.38□□□□□ -0.91
LSM1-202ENST00000520286 USP18Q9UMW8 372 aa9.38□□□□□ -0.91
LSM1-202ENST00000520286 CDY2AQ9Y6F7 541 aa9.38□□□□□ -0.91
LSM1-202ENST00000520286 CUX2O14529 1486 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 A6NNZ2 444 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 ZNF839A8K0R7 811 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 DTNBO60941 627 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 IGHA1P01876 353 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 PFKPQ01813 784 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 PPARAQ07869 468 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 TMEM62Q0P6H9 643 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 SAFB2Q14151 953 aaKnown RBP eCLIP9.37□□□□□ -0.91
LSM1-202ENST00000520286 ZNF792Q3KQV3 632 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 LRSAM1Q6UWE0 723 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 AMIGO3Q86WK7 504 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 PROSER1Q86XN7 944 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 PRR18Q8N4B5 295 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 CAMKK1Q8N5S9 505 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 ALG3Q92685 438 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 C1GALT1C1Q96EU7 318 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 DDX11Q96FC9 970 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 MTG2Q9H4K7 406 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 FAM204AQ9H8W3 233 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 GALNT8Q9NY28 637 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 KLHL14Q9P2G3 628 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 RBPJLQ9UBG7 517 aa9.37□□□□□ -0.91
LSM1-202ENST00000520286 CELA3BP08861 270 aa9.36□□□□□ -0.91
LSM1-202ENST00000520286 RHCEP18577 417 aa9.36□□□□□ -0.91
LSM1-202ENST00000520286 ECE1P42892 770 aa9.36□□□□□ -0.91
LSM1-202ENST00000520286 RHDQ02161 417 aa9.36□□□□□ -0.91
LSM1-202ENST00000520286 VASNQ6EMK4 673 aa9.36□□□□□ -0.91
LSM1-202ENST00000520286 SRGAP1Q7Z6B7 1085 aa9.36□□□□□ -0.91
LSM1-202ENST00000520286 FAM43AQ8N2R8 423 aa9.36□□□□□ -0.91
LSM1-202ENST00000520286 IGDCC4Q8TDY8 1250 aa9.36□□□□□ -0.91
LSM1-202ENST00000520286 INTS4Q96HW7 963 aaKnown RBP9.36□□□□□ -0.91
LSM1-202ENST00000520286 TPP1O14773 563 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 MAFGO15525 162 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 OPHN1O60890 802 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 WNT11O96014 354 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 AFMP43652 599 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 NKX3-2P78367 333 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 CR1LQ2VPA4 569 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 PGS1Q32NB8 556 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 LONRF3Q496Y0 759 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 LIPIQ6XZB0 460 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 OVCH2Q7RTZ1 564 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 CDYL2Q8N8U2 506 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 PPP1R35Q8TAP8 253 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 GAB3Q8WWW8 586 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 FATE1Q969F0 183 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 PITHD1Q9GZP4 211 aaPredicted RBP9.35□□□□□ -0.91
LSM1-202ENST00000520286 NGRNQ9NPE2 291 aaKnown RBP9.35□□□□□ -0.91
LSM1-202ENST00000520286 LIMCH1Q9UPQ0 1083 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 PCDHB6Q9Y5E3 794 aa9.35□□□□□ -0.91
LSM1-202ENST00000520286 OR14I1A6ND48 311 aa9.34□□□□□ -0.91
LSM1-202ENST00000520286 PMM2O15305 246 aa9.34□□□□□ -0.91
LSM1-202ENST00000520286 ZBED1O96006 694 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms