RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 BASP1P80723 227 aaKnown RBP12.6□□□□□ -0.39
SYNPO-204ENST00000519664 FAM47CQ5HY64 1035 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 TMEM270Q6UE05 265 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 ELAC2Q9BQ52 826 aaKnown RBP12.6□□□□□ -0.39
SYNPO-204ENST00000519664 AKT3Q9Y243 479 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 KRT1P04264 644 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 PSMD6Q15008 389 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 PPFIBP2Q8ND30 876 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 RUNDC3BQ96NL0 473 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 FBXO28Q9NVF7 368 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 PDE4DIPQ5VU43 2346 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 SART1O43290 800 aaKnown RBP12.59□□□□□ -0.39
SYNPO-204ENST00000519664 HIP1RO75146 1068 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 VAMP7P51809 220 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 RWDD2BP57060 319 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 CDO1Q16878 200 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 TRIM68Q6AZZ1 485 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 HIBCHQ6NVY1 386 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-204ENST00000519664 DNAJC24Q6P3W2 148 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 OR2W6PQ8NHA6 318 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 ADPGKQ9BRR6 497 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 MSTO1Q9BUK6 570 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-204ENST00000519664 GABBR1Q9UBS5 961 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 HESX1Q9UBX0 185 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 SPATA31D1Q6ZQQ2 1576 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 QARSP47897 775 aaKnown RBP12.59□□□□□ -0.39
SYNPO-204ENST00000519664 HDLBPQ00341 1268 aaKnown RBP12.59□□□□□ -0.39
SYNPO-204ENST00000519664 KCTD2Q14681 263 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 BBS9Q3SYG4 887 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 CCDC38Q502W7 563 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 NUGGCQ68CJ6 796 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 SNRNP48Q6IEG0 339 aaKnown RBP12.59□□□□□ -0.39
SYNPO-204ENST00000519664 CCDC62Q6P9F0 684 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 HAUS6Q7Z4H7 955 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 SDCCAG8Q86SQ7 713 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-204ENST00000519664 RFX6Q8HWS3 928 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 SLC30A5Q8TAD4 765 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 NBPF3Q9H094 633 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 ADAM22Q9P0K1 906 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 NOC2LQ9Y3T9 749 aaKnown RBP12.59□□□□□ -0.39
SYNPO-204ENST00000519664 GPR75-ASB3A0A0A6YYF3 556 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 ZBTB7AO95365 584 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 ADRA2BP18089 450 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 BMP6P22004 513 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 SLC18A3Q16572 532 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 CEP128Q6ZU80 1094 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 CNPY4Q8N129 248 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 MICAL1Q8TDZ2 1067 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 WRNIP1Q96S55 665 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 INTS2Q9H0H0 1204 aaKnown RBP12.59□□□□□ -0.39
SYNPO-204ENST00000519664 POLLQ9UGP5 575 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 SALL1Q9NSC2 1324 aa12.59□□□□□ -0.39
SYNPO-204ENST00000519664 KIF20BQ96Q89 1820 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 A0A0U1RQJ8 604 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 RSPH10B2B2RC85 870 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 H0YCG3 227 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 GOLGA8MH3BSY2 632 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 CCDC188H7C350 402 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 RSPH10BP0C881 870 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 SLURP2P0DP57 97 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 CARSP49589 748 aaKnown RBP12.58□□□□□ -0.4
SYNPO-204ENST00000519664 FAM47EQ6ZV65 393 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 NME8Q8N427 588 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 ZWILCHQ9H900 591 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 RNF146Q9NTX7 359 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 I3L4J1 428 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 NDC80O14777 642 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 CAPN9O14815 690 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 CYP26A1O43174 497 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 COPB2P35606 906 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 GALCP54803 685 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 GPC5P78333 572 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 CCDC14Q49A88 953 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 RHOT2Q8IXI1 618 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 C1orf54Q8WWF1 131 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 P3H4Q92791 437 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 IL17RBQ9NRM6 502 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 FBXL5Q9UKA1 691 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 PRR12Q9ULL5 1215 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 PALM3A6NDB9 673 aaPredicted RBP12.58□□□□□ -0.4
SYNPO-204ENST00000519664 LRRC14Q15048 493 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 LGSNQ5TDP6 509 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 LRRC8CQ8TDW0 803 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 SUFUQ9UMX1 484 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 CAPN6Q9Y6Q1 641 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 SHPRHQ149N8 1683 aa12.58□□□□□ -0.4
SYNPO-204ENST00000519664 ITIH6Q6UXX5 1313 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 P4HA1P13674 534 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 PLA2G4AP47712 749 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 MTM1Q13496 603 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 PRPF38AQ8NAV1 312 aaKnown RBP12.57□□□□□ -0.4
SYNPO-204ENST00000519664 N4BP2L2Q92802 583 aaPredicted RBP12.57□□□□□ -0.4
SYNPO-204ENST00000519664 A0A087X0T9 212 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 EVI5O60447 810 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 ZRANB2O95218 330 aaKnown RBP eCLIP12.57□□□□□ -0.4
SYNPO-204ENST00000519664 P4HBP07237 508 aaKnown RBP12.57□□□□□ -0.4
SYNPO-204ENST00000519664 FAM228BP0C875 321 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 RXRBP28702 533 aa12.57□□□□□ -0.4
SYNPO-204ENST00000519664 PEX19P40855 299 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms