RNA–Protein interactions for RNA: ENST00000514469.1

HMGXB3-205, Transcript of HMG-box containing 3, humanhuman

TSL 5

Gene HMGXB3, Length 975 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-205ENST00000514469 NEK9Q8TD19 979 aa11.74□□□□□ -0.53
HMGXB3-205ENST00000514469 SH2D3AQ9BRG2 576 aa11.74□□□□□ -0.53
HMGXB3-205ENST00000514469 WRAP73Q9P2S5 460 aaPredicted RBP11.74□□□□□ -0.53
HMGXB3-205ENST00000514469 PLAGL2Q9UPG8 496 aa11.74□□□□□ -0.53
HMGXB3-205ENST00000514469 TBKBP1A7MCY6 615 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 DDX11L8A8MPP1 907 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 BTBD18B2RXH4 712 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 DKC1O60832 514 aaKnown RBP eCLIP11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 ITGB1P05556 798 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 P4HBP07237 508 aaKnown RBP11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 IBSPP21815 317 aaPredicted RBP11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 KCNA5P22460 613 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 CDC42EP1Q00587 391 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 CAMK1Q14012 370 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 EPHA7Q15375 998 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 FAM102BQ5T8I3 360 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 PLA2G4FQ68DD2 849 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 ZNF410Q86VK4 478 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 DIS3L2Q8IYB7 885 aaKnown RBP11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 SLFN12Q8IYM2 578 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 NLRP7Q8WX94 980 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 PABPC5Q96DU9 382 aaKnown RBP11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 ZNF668Q96K58 619 aaPredicted RBP11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 SCLT1Q96NL6 688 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 LXNQ9BS40 222 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 ATP6V0A4Q9HBG4 840 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 ALG13Q9NP73 1137 aaKnown RBP11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 CYP26B1Q9NR63 512 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 RNF19AQ9NV58 838 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 PPME1Q9Y570 386 aa11.73□□□□□ -0.53
HMGXB3-205ENST00000514469 WNT7AO00755 349 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 HOXA2O43364 376 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 FGFR1P11362 822 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 ZSCAN20P17040 1043 aaPredicted RBP11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 FGFR4P22455 802 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 DNAJB1P25685 340 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 DNM2P50570 870 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 FOSBP53539 338 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 HYAL1Q12794 435 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 TRIM29Q14134 588 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 CTC1Q2NKJ3 1217 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 NCAPH2Q6IBW4 605 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 ECHDC2Q86YB7 292 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 C4orf19Q8IY42 314 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 KLHL23Q8NBE8 558 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 SPPL3Q8TCT6 385 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 KIF2CQ99661 725 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 JPH2Q9BR39 696 aaPredicted RBP11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 GCOM2Q9BZD3 368 aaPredicted RBP11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 SUCLA2Q9P2R7 463 aaPredicted RBP11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 HCSTQ9UBK5 93 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 LIMCH1Q9UPQ0 1083 aa11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 FNDC1Q4ZHG4 1894 aaPredicted RBP11.72□□□□□ -0.53
HMGXB3-205ENST00000514469 EVPLQ92817 2033 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 A0A087WZ62 844 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 NCK2O43639 380 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 NEMFO60524 1076 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 BAG4O95429 457 aaKnown RBP11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 ATF7P17544 494 aaPredicted RBP11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 SFPQP23246 707 aaKnown RBP eCLIP11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 RFC5P40937 340 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 NPEPPSP55786 919 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 PUS10Q3MIT2 529 aaKnown RBP11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 ZNF598Q86UK7 904 aaKnown RBP11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 RHPN2Q8IUC4 686 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 CCDC83Q8IWF9 413 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 ZNF579Q8NAF0 562 aaKnown RBP11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 COLGALT1Q8NBJ5 622 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 POF1BQ8WVV4 589 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 SLC7A3Q8WY07 619 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 DYDC2Q96IM9 177 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 CEP170P1Q96L14 293 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 CASD1Q96PB1 797 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 FDXACB1Q9BRP7 624 aaPredicted RBP11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 LLPHQ9BRT6 129 aaKnown RBP11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 TMEM117Q9H0C3 514 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 DHX33Q9H6R0 707 aaKnown RBP11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 CWH43Q9H720 699 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 TYW1Q9NV66 732 aaKnown RBP11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 RGL1Q9NZL6 768 aa11.71□□□□□ -0.53
HMGXB3-205ENST00000514469 ARID2Q68CP9 1835 aa11.71□□□□□ -0.54
HMGXB3-205ENST00000514469 MYO9BQ13459 2157 aa11.71□□□□□ -0.54
HMGXB3-205ENST00000514469 PLXNA4Q9HCM2 1894 aa11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 A0A0U1RQF3 1178 aa11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 GRXCR2A6NFK2 248 aa11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 H3BQ06 376 aaPredicted RBP11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 GAS2O43903 313 aaKnown RBP11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 MARCH6O60337 910 aa11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 CSDE1O75534 798 aaKnown RBP11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 CSPG5O95196 566 aa11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 LAG3P18627 525 aa11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 YWHABP31946 246 aaKnown RBP11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 IRS1P35568 1242 aa11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 LTBRP36941 435 aa11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 POLGP54098 1239 aaPredicted RBP11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 CYP4A11Q02928 519 aa11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 UBE3AQ05086 875 aa11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 CALCRLQ16602 461 aa11.7□□□□□ -0.54
HMGXB3-205ENST00000514469 CSPP1Q1MSJ5 1256 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms