RNA–Protein interactions for RNA: ENST00000513761.5

CLCN3-209, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCN3, Length 6,692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-209ENST00000513761 PDHBP11177 359 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 IRX4P78413 519 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 KRT81Q14533 505 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 NAALADL2Q58DX5 795 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 SMC1BQ8NDV3 1235 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 DEPTORQ8TB45 409 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 TTC17Q96AE7 1141 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 NBPF3Q9H094 633 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 GEMIN8Q9NWZ8 242 aaKnown RBP8.33□□□□□ -1.08
CLCN3-209ENST00000513761 A0A087X0T9 212 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 FAM228BP0C875 321 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 TTI2Q6NXR4 508 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 PDXDC2PQ6P474 469 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 DNAAF5Q86Y56 855 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 TRIM59Q8IWR1 403 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 RAPGEF5Q92565 580 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 DYDC2Q96IM9 177 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 FAM84BQ96KN1 310 aaPredicted RBP8.33□□□□□ -1.08
CLCN3-209ENST00000513761 NUP85Q9BW27 656 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 PACSIN1Q9BY11 444 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 NOD2Q9HC29 1040 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 GINM1Q9NU53 330 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 ARHGAP20Q9P2F6 1191 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.33□□□□□ -1.08
CLCN3-209ENST00000513761 SYF2O95926 243 aaKnown RBP8.33□□□□□ -1.08
CLCN3-209ENST00000513761 HSPA9P38646 679 aaKnown RBP8.33□□□□□ -1.08
CLCN3-209ENST00000513761 AOC3Q16853 763 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 ABCB5Q2M3G0 1257 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 RFX6Q8HWS3 928 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 SYT2Q8N9I0 419 aaPredicted RBP8.33□□□□□ -1.08
CLCN3-209ENST00000513761 ZNF564Q8TBZ8 553 aaPredicted RBP8.33□□□□□ -1.08
CLCN3-209ENST00000513761 CHURC1Q8WUH1 139 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.33□□□□□ -1.08
CLCN3-209ENST00000513761 FGFR1OP2Q9NVK5 253 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 LEMD3Q9Y2U8 911 aa8.33□□□□□ -1.08
CLCN3-209ENST00000513761 KIF3CO14782 793 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 TROAPQ12815 778 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 AGBL2Q5U5Z8 902 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 PYROXD1Q8WU10 500 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 GLG1Q92896 1179 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 SRP68Q9UHB9 627 aaKnown RBP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 MRPL11Q9Y3B7 192 aaKnown RBP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 FAM153BP0C7A2 387 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 SCP2P22307 547 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 FAM153CQ494X1 144 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 PLA2G12BQ9BX93 195 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 INTS2Q9H0H0 1204 aaKnown RBP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 VCPKMTQ9H867 229 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 FAM153AQ9UHL3 310 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 TCHHQ07283 1943 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 CYP19A1P11511 503 aaPredicted RBP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 SOX5P35711 763 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 SEMA3FQ13275 785 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 NT5DC1Q5TFE4 455 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 METTL13Q8N6R0 699 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 NUF2Q9BZD4 464 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 IFT122Q9HBG6 1241 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 CHORDC1Q9UHD1 332 aaPredicted RBP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 USP15Q9Y4E8 981 aaPredicted RBP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 HOXA7P31268 230 aaPredicted RBP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 MDM2Q00987 491 aaPredicted RBP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 DHX34Q14147 1143 aaKnown RBP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 SLC29A2Q14542 456 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 PASD1Q8IV76 773 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 CEP120Q8N960 986 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 TSEN2Q8NCE0 465 aaKnown RBP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 MXD3Q9BW11 206 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 LRRIQ4A6NIV6 560 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 AGTP01019 485 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 SAT1P21673 171 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 SCTRP47872 440 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 SLC20A2Q08357 652 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 PPP2R5CQ13362 524 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 TTLL12Q14166 644 aaPredicted RBP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 NSMCE1Q8WV22 266 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 RNF25Q96BH1 459 aaPredicted RBP8.32□□□□□ -1.08
CLCN3-209ENST00000513761 VCX3AQ9NNX9 186 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 STOML1Q9UBI4 398 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 GINS2Q9Y248 185 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 ARL2BPQ9Y2Y0 163 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 TTLL3Q9Y4R7 772 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 OVOS2A0A0G2JMS6 1433 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 COL15A1P39059 1388 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 KIF20BQ96Q89 1820 aa8.32□□□□□ -1.08
CLCN3-209ENST00000513761 PDE2AO00408 941 aaPredicted RBP8.31□□□□□ -1.08
CLCN3-209ENST00000513761 IGF2BP3O00425 579 aaKnown RBP eCLIP8.31□□□□□ -1.08
CLCN3-209ENST00000513761 ZBTB5O15062 677 aa8.31□□□□□ -1.08
CLCN3-209ENST00000513761 DKC1O60832 514 aaKnown RBP eCLIP8.31□□□□□ -1.08
CLCN3-209ENST00000513761 MYBL2P10244 700 aa8.31□□□□□ -1.08
CLCN3-209ENST00000513761 BPIFB4P59827 614 aa8.31□□□□□ -1.08
CLCN3-209ENST00000513761 CDR2Q01850 454 aa8.31□□□□□ -1.08
CLCN3-209ENST00000513761 KRT17Q04695 432 aa8.31□□□□□ -1.08
CLCN3-209ENST00000513761 TBC1D9BQ66K14 1250 aa8.31□□□□□ -1.08
CLCN3-209ENST00000513761 LRRC34Q8IZ02 419 aa8.31□□□□□ -1.08
CLCN3-209ENST00000513761 NSUN4Q96CB9 384 aaKnown RBP8.31□□□□□ -1.08
CLCN3-209ENST00000513761 TMEM206Q9H813 350 aa8.31□□□□□ -1.08
CLCN3-209ENST00000513761 ALG13Q9NP73 1137 aaKnown RBP8.31□□□□□ -1.08
CLCN3-209ENST00000513761 CFAP69A5D8W1 941 aa8.31□□□□□ -1.08
CLCN3-209ENST00000513761 FAM196BA6NMK8 535 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms