RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CAPN1P07384 714 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 HIBADHP31937 336 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 TECP42680 631 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 SERPINH1P50454 418 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 FBXW10Q5XX13 1052 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 EFL1Q7Z2Z2 1120 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 P3H2Q8IVL5 708 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 SEPT1Q8WYJ6 367 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 MAGED4Q96JG8 741 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 XPO6Q96QU8 1125 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 DBNDD2Q9BQY9 259 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 WDR11Q9BZH6 1224 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 WNT8AQ9H1J5 351 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 ARMT1Q9H993 441 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 GTSE1Q9NYZ3 720 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 DCTN4Q9UJW0 460 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 FIS1Q9Y3D6 152 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 FLT4P35916 1363 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 MED23Q9ULK4 1368 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 ANGPT2O15123 496 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 CXCR5P32302 372 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 ARHGEF1Q92888 912 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 SEC16BQ96JE7 1060 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 SNTNA6NMZ2 147 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 OCM2P0CE71 109 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 OCMP0CE72 109 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 IL12RB1P42701 662 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM69CQ0P6D2 419 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 IMPG1Q17R60 797 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 SUGP1Q8IWZ8 645 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 B4GALNT2Q8NHY0 566 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 SNRNP27Q8WVK2 155 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 NLRP4Q96MN2 994 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 DCLRE1BQ9H816 532 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 LGALS16A8MUM7 142 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 TPP2P29144 1249 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 GYS2P54840 703 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 SLC20A2Q08357 652 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 ITIH4Q14624 930 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 KLHL12Q53G59 568 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM102BQ5T8I3 360 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 ZSCAN10Q96SZ4 725 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 NRDE2Q9H7Z3 1164 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 PSTPIP2Q9H939 334 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 ZSCAN32Q9NX65 697 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 CHMP2BQ9UQN3 213 aa11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 NIP7Q9Y221 180 aaKnown RBP eCLIP11.93□□□□□ -0.5
LIMCH1-217ENST00000512946 ZMYM4Q5VZL5 1548 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 ODR4Q5SWX8 454 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM45BPQ6NSW5 357 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 CDH24Q86UP0 819 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM133AQ8N9E0 248 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 ZBTB10Q96DT7 871 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 CALN1Q9BXU9 219 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 OSBPL3Q9H4L5 887 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 CD209Q9NNX6 404 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 UBA2Q9UBT2 640 aaPredicted RBP11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 DDX25Q9UHL0 483 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 SRPRBQ9Y5M8 271 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 DISP3Q9P2K9 1392 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 MTRF1O75570 445 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM200BP0CF97 657 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 MYBL1P10243 752 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 TMOD1P28289 359 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 R3HDM1Q15032 1099 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 XKR9Q5GH70 373 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 JADE3Q92613 823 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 ULK4Q96C45 1275 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 MMS19Q96T76 1030 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 PKD2L1Q9P0L9 805 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 PLCH2O75038 1416 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 PDE9AO76083 593 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 ATXN3P54252 364 aaPredicted RBP11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 GPC5P78333 572 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 CENPPQ6IPU0 288 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 CYB5D1Q6P9G0 228 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 TTC33Q6PID6 262 aaPredicted RBP11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 PLA2G4DQ86XP0 818 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 CLEC4FQ8N1N0 589 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 ZFRQ96KR1 1074 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 AP1M1Q9BXS5 423 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 DDX56Q9NY93 547 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 GCNT4Q9P109 453 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 SEL1LQ9UBV2 794 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 APPL1Q9UKG1 709 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 TNNQ9UQP3 1299 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM32AQ9Y421 112 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM25AB3EWG3 89 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM25CB3EWG5 89 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM25GB3EWG6 89 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 ANXA1P04083 346 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 MXI1P50539 228 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 KRT76Q01546 638 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 MECOMQ03112 1051 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 PPARAQ07869 468 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 RASGRF1Q13972 1273 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 CCDC149Q6ZUS6 474 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 ABHD10Q9NUJ1 306 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 STAP2Q9UGK3 403 aa11.92□□□□□ -0.5
LIMCH1-217ENST00000512946 ZHX2Q9Y6X8 837 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms