RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 PSMC6P62333 389 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 MRPS25P82663 173 aaKnown RBP10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 GUCY1A3Q02108 690 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 USP17L24Q0WX57 530 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 TRADDQ15628 312 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 RINT1Q6NUQ1 792 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 USP17L6PQ6QN14 398 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 SLC5A5Q92911 643 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 GCNT4Q9P109 453 aa10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 PACSIN2Q9UNF0 486 aaPredicted RBP10.04□□□□□ -0.8
PDGFRA-208ENST00000509490 MIF4GDA9UHW6 222 aaKnown RBP10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 FAM86B1E9PN63 330 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 KRIT1O00522 736 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 OPLAHO14841 1288 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 KRT18P05783 430 aaKnown RBP10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 FAM86B2P0C5J1 330 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 GALCP54803 685 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 SNRPFP62306 86 aaKnown RBP10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 CYP1B1Q16678 543 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 SLFN13Q68D06 897 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 FAM196AQ6ZSG2 479 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 TMEM179Q6ZVK1 233 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 RHOT2Q8IXI1 618 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 OTUD6BQ8N6M0 293 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 CYFIP2Q96F07 1278 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 RUNDC3BQ96NL0 473 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 TBC1D7Q9P0N9 293 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 ANKRD62A6NC57 917 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 POLRMTO00411 1230 aaKnown RBP10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 SSBP05455 408 aaKnown RBP eCLIP10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 STAT3P40763 770 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 FMO5P49326 533 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 GTF2IP78347 998 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 ENPEPQ07075 957 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 STXBP4Q6ZWJ1 553 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 KCTD1Q719H9 257 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 KLHL7Q8IXQ5 586 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 TEKT1Q969V4 418 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 RPS6KC1Q96S38 1066 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 EIF2AK1Q9BQI3 630 aaKnown RBP10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 EPB41L4BQ9H329 900 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 PCYOX1Q9UHG3 505 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 RABGAP1Q9Y3P9 1069 aa10.03□□□□□ -0.8
PDGFRA-208ENST00000509490 PPEF1O14829 653 aaPredicted RBP10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 PPP1R12BO60237 982 aaPredicted RBP10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 EVI5O60447 810 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 PLA2G6O60733 806 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 PSMD10O75832 226 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 SLC16A2P36021 539 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 LIG3P49916 1009 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 ALCAMQ13740 583 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 ZNF568Q3ZCX4 644 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 SLC27A3Q5K4L6 730 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 KCTD16Q68DU8 428 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 LMO3Q8TAP4 145 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 TATDN2Q93075 761 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 CABS1Q96KC9 395 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 RUSC1Q9BVN2 902 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 PI4KBQ9UBF8 816 aa10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 UTP11Q9Y3A2 253 aaKnown RBP10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 COL11A2P13942 1736 aaPredicted RBP10.02□□□□□ -0.8
PDGFRA-208ENST00000509490 TBCAO75347 108 aaKnown RBP10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 EEF2P13639 858 aaKnown RBP10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 CTNNA1P35221 906 aaKnown RBP10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 ATP1A2P50993 1020 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 KLRC3Q07444 240 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 BYSLQ13895 437 aaKnown RBP10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 DCAF12L1Q5VU92 463 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 OTOP1Q7RTM1 612 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 FBXO11Q86XK2 927 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 FAM186BQ8IYM0 893 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 NEK9Q8TD19 979 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 SLCO2A1Q92959 643 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 GJA10Q969M2 543 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 ERP44Q9BS26 406 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 PCDHA3Q9Y5H8 950 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 PSME4Q14997 1843 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 SLX4Q8IY92 1834 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 BUB1BO60566 1050 aaPredicted RBP10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 VCAM1P19320 739 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 CTNNA2P26232 953 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 PTGIRP43119 386 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 CASP4P49662 377 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 PABPC4Q13310 644 aaKnown RBP eCLIP10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 ERMARDQ5T6L9 678 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 SYDE2Q5VT97 1194 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 ZNF720Q7Z2F6 126 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 HOOK3Q86VS8 718 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 CLEC10AQ8IUN9 316 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 C12orf50Q8NA57 414 aaPredicted RBP10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 HINFPQ9BQA5 517 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 KDM4CQ9H3R0 1056 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 ST6GALNAC4Q9H4F1 302 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 GEMIN8Q9NWZ8 242 aaKnown RBP10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 APEX2Q9UBZ4 518 aa10.02□□□□□ -0.81
PDGFRA-208ENST00000509490 SYNGAP1Q96PV0 1343 aa10.01□□□□□ -0.81
PDGFRA-208ENST00000509490 GTF2A1P52655 376 aaPredicted RBP10.01□□□□□ -0.81
PDGFRA-208ENST00000509490 PICALMQ13492 652 aa10.01□□□□□ -0.81
PDGFRA-208ENST00000509490 PRR16Q569H4 304 aa10.01□□□□□ -0.81
PDGFRA-208ENST00000509490 COL23A1Q86Y22 540 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms