RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 GDF9O60383 454 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 CDKL5O76039 1030 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 MARK3P27448 753 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 NLRP5P59047 1200 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 PRR20EP86478 221 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 PRR20CP86479 221 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 PRR20DP86480 221 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 PRR20BP86481 221 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 PRR20AP86496 221 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 KRT76Q01546 638 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 MGAT3Q09327 533 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 ANKRD1Q15327 319 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 ZNF484Q5JVG2 852 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 MIS18BP1Q6P0N0 1132 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 RUFY4Q6ZNE9 571 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 ATP8B4Q8TF62 1192 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 DNAJB3Q8WWF6 145 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 RIT2Q99578 217 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 COL25A1Q9BXS0 654 aaPredicted RBP9.05□□□□□ -0.96
SCN1A-207ENST00000507401 IFIH1Q9BYX4 1025 aaKnown RBP9.05□□□□□ -0.96
SCN1A-207ENST00000507401 UPF3BQ9BZI7 483 aaKnown RBP9.05□□□□□ -0.96
SCN1A-207ENST00000507401 ZNF302Q9NR11 478 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 VPS54Q9P1Q0 977 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 PCDHA4Q9UN74 947 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 PCDHA10Q9Y5I2 948 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 MAFBQ9Y5Q3 323 aaPredicted RBP9.05□□□□□ -0.96
SCN1A-207ENST00000507401 MTCH2Q9Y6C9 303 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 KDM3AQ9Y4C1 1321 aa9.05□□□□□ -0.96
SCN1A-207ENST00000507401 CYP3A7-CYP3A51PA0A087WV96 503 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 UQCRHLA0A096LP55 91 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.04□□□□□ -0.96
SCN1A-207ENST00000507401 LINC01553A4QN01 128 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 M0R2N6 131 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 ENPP3O14638 875 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 BACH1O14867 736 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 EDIL3O43854 480 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 PFKFB2O60825 505 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 PSAPP07602 524 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 UQCRHP07919 91 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 CTSHP09668 335 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 CYP3A7P24462 503 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 KLRC1P26715 233 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 MRPS6P82932 125 aaKnown RBP9.04□□□□□ -0.96
SCN1A-207ENST00000507401 LPIN1Q14693 890 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 Q4G0T1 1027 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 PRR16Q569H4 304 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 FBXO47Q5MNV8 452 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 SWSAP1Q6NVH7 229 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 PDXDC2PQ6P474 469 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 MTHFD1LQ6UB35 978 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 MOXD1Q6UVY6 613 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 TSHZ1Q6ZSZ6 1077 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 TMCO2Q7Z6W1 182 aaPredicted RBP9.04□□□□□ -0.96
SCN1A-207ENST00000507401 PARP9Q8IXQ6 854 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 BLIDQ8IZY5 108 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 PDCL2Q8N4E4 241 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 FAM184AQ8NB25 1140 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 DAGLBQ8NCG7 672 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 ARNTL2Q8WYA1 636 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 LENG9Q96B70 501 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 SAMD11Q96NU1 681 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 TGS1Q96RS0 853 aaKnown RBP9.04□□□□□ -0.96
SCN1A-207ENST00000507401 FTHL17Q9BXU8 183 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 OSBPL7Q9BZF2 842 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 GZF1Q9H116 711 aaPredicted RBP9.04□□□□□ -0.96
SCN1A-207ENST00000507401 TCEAL9Q9UHQ7 104 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 MICAL3Q7RTP6 2002 aa9.04□□□□□ -0.96
SCN1A-207ENST00000507401 LCHNA4D1U4 455 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 WDR64B1ANS9 1081 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 M0QZ92 97 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 RFXAPO00287 272 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 MSH4O15457 936 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 MAGEB2O15479 319 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 LPXNO60711 386 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 PPFIA3O75145 1194 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 ARHGEF15O94989 841 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 MBD3O95983 291 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 TPM3P06753 285 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 XBP1P17861 261 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 ATP4AP20648 1035 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 SFNP31947 248 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 RPIAP49247 311 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 IGBP1P78318 339 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 MRPS5P82675 430 aaKnown RBP9.03□□□□□ -0.96
SCN1A-207ENST00000507401 GRB10Q13322 594 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 CCDC85BQ15834 202 aaPredicted RBP9.03□□□□□ -0.96
SCN1A-207ENST00000507401 CCDC60Q8IWA6 550 aaPredicted RBP9.03□□□□□ -0.96
SCN1A-207ENST00000507401 MYOCDQ8IZQ8 938 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 RASGRP4Q8TDF6 673 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 TBCKQ8TEA7 893 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 PPM1EQ8WY54 764 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 SLC5A5Q92911 643 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 MBOAT7Q96N66 472 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 USB1Q9BQ65 265 aaKnown RBP9.03□□□□□ -0.96
SCN1A-207ENST00000507401 CELF4Q9BZC1 486 aaKnown RBP9.03□□□□□ -0.96
SCN1A-207ENST00000507401 CERS4Q9HA82 394 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 SUGCTQ9HAC7 445 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 NRBP2Q9NSY0 501 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 PCDHGC3Q9UN70 934 aa9.03□□□□□ -0.96
SCN1A-207ENST00000507401 CEP131Q9UPN4 1083 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms