RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SLC30A10Q6XR72 485 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 SLFN11Q7Z7L1 901 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TRPM4Q8TD43 1214 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 WHAMMQ8TF30 809 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 OLFML3Q9NRN5 406 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 STXBP5LQ9Y2K9 1186 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 RABGAP1Q9Y3P9 1069 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 MAGEA9P43362 315 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 RRP1BQ14684 758 aaKnown RBP17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 SKIDA1Q1XH10 827 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TCERG1LQ5VWI1 586 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CDAN1Q8IWY9 1227 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 METTL13Q8N6R0 699 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 HSD17B14Q9BPX1 270 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GCNT4Q9P109 453 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CEP350Q5VT06 3117 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 RBBP6Q7Z6E9 1792 aaKnown RBP17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GTPBP10A4D1E9 387 aaKnown RBP17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TBCAO75347 108 aaKnown RBP17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 NPM3O75607 178 aaKnown RBP17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 BMP3P12645 472 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GUCY2CP25092 1073 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CCT5P48643 541 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TNIP1Q15025 636 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 IFI16Q16666 785 aaKnown RBP17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 PTPROQ16827 1216 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 KCTD16Q68DU8 428 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 OGFOD1Q8N543 542 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ISCUQ9H1K1 167 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 PCDHB13Q9Y5F0 798 aa17.53■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 A0A1W2PRG0 241 aa17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CEP104O60308 925 aa17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 FLOT1O75955 427 aa17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 NMT1P30419 496 aaKnown RBP17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 HSPA9P38646 679 aaKnown RBP17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 HDLBPQ00341 1268 aaKnown RBP17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 IKQ13123 557 aaPredicted RBP17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CTTNQ14247 550 aaKnown RBP17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 PRAMEF18Q5VWM3 479 aa17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 C1orf186Q6ZWK4 172 aa17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 BCAS4Q8TDM0 211 aa17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 PIGOQ8TEQ8 1089 aa17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 WDR18Q9BV38 432 aa17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 VPS33BQ9H267 617 aa17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TAF1DQ9H5J8 278 aaPredicted RBP17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 VEZTQ9HBM0 779 aa17.52■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 A0A0A6YYK5 440 aaPredicted RBP17.52■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PIK3CDO00329 1044 aa17.52■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SLITRK3O94933 977 aa17.52■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 GAP43P17677 238 aa17.52■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 FKBP1AP62942 108 aaKnown RBP17.52■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 EMC10Q5UCC4 262 aa17.52■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 OTOP1Q7RTM1 612 aa17.52■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 EIF1ADQ8N9N8 165 aaKnown RBP17.52■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SLC30A5Q8TAD4 765 aa17.52■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 RABEP2Q9H5N1 569 aa17.52■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 TCP10L2B9ZVM9 353 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 ZBTB39O15060 712 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 H2AFZP0C0S5 128 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PDCLQ13371 301 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 NFIL3Q16649 462 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 ZC2HC1CQ53FD0 456 aaPredicted RBP17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 KDM7AQ6ZMT4 941 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 H2AFVQ71UI9 128 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 CNPY4Q8N129 248 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 LNX1Q8TBB1 728 aaPredicted RBP17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 FIZ1Q96SL8 496 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 MYOZ2Q9NPC6 264 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 INTUQ9ULD6 942 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PRR12Q9ULL5 1215 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 WNT10BO00744 389 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 EIF3DO15371 548 aaKnown RBP eCLIP17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 GFPT2O94808 682 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 GH2P01242 217 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 POTEJP0CG39 1038 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 ZNF76P36508 570 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 RASGEF1CQ8N431 466 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 KCTD17Q8N5Z5 321 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 C1orf131Q8NDD1 294 aaKnown RBP17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 DYDC2Q96IM9 177 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 CALR3Q96L12 384 aaKnown RBP17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.51■□□□□ 0.391e-6■■□□□ 13.1
MSH5-SAPCD1-208ENST00000498473 AP1M1Q9BXS5 423 aa17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 NOC2LQ9Y3T9 749 aaKnown RBP17.51■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PSMD10O75832 226 aa17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 FERP16591 822 aa17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 COG2Q14746 738 aa17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 NT5DC3Q86UY8 548 aa17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 KSR1Q8IVT5 923 aa17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 FAM186BQ8IYM0 893 aa17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 GPC2Q8N158 579 aa17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PROCA1Q8NCQ7 364 aaPredicted RBP17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 U2AF1L4Q8WU68 220 aaKnown RBP17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 RNPC3Q96LT9 517 aaKnown RBP17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 TUFT1Q9NNX1 390 aa17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SUCLA2Q9P2R7 463 aaPredicted RBP17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 FZD1Q9UP38 647 aa17.5■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 PGRMC1O00264 195 aaKnown RBP17.49■□□□□ 0.39
MSH5-SAPCD1-208ENST00000498473 SART1O43290 800 aaKnown RBP17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms