RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 ZSCAN12O43309 604 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 ZEB2O60315 1214 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 GCNT3O95395 438 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 CST5P28325 142 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-214ENST00000495485 CNGA1P29973 690 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 YWHABP31946 246 aaKnown RBP11.29□□□□□ -0.6
HDAC3-214ENST00000495485 SMTNP53814 917 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 SNRPFP62306 86 aaKnown RBP11.29□□□□□ -0.6
HDAC3-214ENST00000495485 ITGB3BPQ13352 177 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-214ENST00000495485 MAN2A1Q16706 1144 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 BMT2Q1RMZ1 405 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 DUSP28Q4G0W2 176 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 HS2ST1Q7LGA3 356 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 RNF180Q86T96 592 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 SFR1Q86XK3 245 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 FAM178BQ8IXR5 827 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 PCSK9Q8NBP7 692 aaKnown RBP11.29□□□□□ -0.6
HDAC3-214ENST00000495485 ZNF507Q8TCN5 953 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 U2AF1L4Q8WU68 220 aaKnown RBP11.29□□□□□ -0.6
HDAC3-214ENST00000495485 BAG1Q99933 345 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-214ENST00000495485 TSEN34Q9BSV6 310 aaKnown RBP11.29□□□□□ -0.6
HDAC3-214ENST00000495485 SEMA6BQ9H3T3 888 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 TMEM206Q9H813 350 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 C17orf75Q9HAS0 396 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 KCND1Q9NSA2 647 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 SPTLC3Q9NUV7 552 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 TYW1Q9NV66 732 aaKnown RBP11.29□□□□□ -0.6
HDAC3-214ENST00000495485 ZNHIT6Q9NWK9 470 aaKnown RBP11.29□□□□□ -0.6
HDAC3-214ENST00000495485 ZHX1Q9UKY1 873 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-214ENST00000495485 TRAF3IP3Q9Y228 551 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 PPME1Q9Y570 386 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 PCDHA2Q9Y5H9 948 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 ASTN1O14525 1302 aa11.29□□□□□ -0.6
HDAC3-214ENST00000495485 NPHP3-ACAD11A0A0J9YXS1 232 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 CCDC85CA6NKD9 419 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 KPNA6O60684 536 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 OFD1O75665 1012 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 PBX1P40424 430 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 ZNF131P52739 623 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 PMS1P54277 932 aaKnown RBP11.28□□□□□ -0.6
HDAC3-214ENST00000495485 GJA9P57773 515 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 TNFAIP2Q03169 654 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 RAD51AP2Q09MP3 1159 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 ADAM9Q13443 819 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 MTFR1Q15390 333 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 NFIL3Q16649 462 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 VWA3BQ502W6 1294 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 XKR9Q5GH70 373 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 ODR4Q5SWX8 454 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 FAM160B1Q5W0V3 765 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 ARMCX5Q6P1M9 558 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 APTXQ7Z2E3 356 aaKnown RBP11.28□□□□□ -0.6
HDAC3-214ENST00000495485 MCPH1Q8NEM0 835 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 EMID1Q96A84 441 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-214ENST00000495485 HVCN1Q96D96 273 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 ZFP91Q96JP5 570 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-214ENST00000495485 PCMTD1Q96MG8 357 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-214ENST00000495485 DEFB118Q96PH6 123 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 AP5M1Q9H0R1 490 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 UPF3AQ9H1J1 476 aaKnown RBP11.28□□□□□ -0.6
HDAC3-214ENST00000495485 TBC1D7Q9P0N9 293 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 EXOC7Q9UPT5 735 aa11.28□□□□□ -0.6
HDAC3-214ENST00000495485 LUC7L2Q9Y383 392 aaKnown RBP11.28□□□□□ -0.6
HDAC3-214ENST00000495485 MYH9P35579 1960 aaKnown RBP11.27□□□□□ -0.61
HDAC3-214ENST00000495485 MOXD2PA6NHM9 499 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 KBTBD13C9JR72 458 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 DNM1LO00429 736 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 BACH1O14867 736 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 TEX33O43247 280 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 CABYRO75952 493 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 TFRCP02786 760 aaKnown RBP11.27□□□□□ -0.61
HDAC3-214ENST00000495485 EPB41P11171 864 aaKnown RBP11.27□□□□□ -0.61
HDAC3-214ENST00000495485 KCNA2P16389 499 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 TRIM21P19474 475 aaKnown RBP11.27□□□□□ -0.61
HDAC3-214ENST00000495485 CCND3P30281 292 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-214ENST00000495485 RARRES1P49788 294 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 RGS19P49795 217 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 CPT1AP50416 773 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 MARSP56192 900 aaKnown RBP11.27□□□□□ -0.61
HDAC3-214ENST00000495485 CCZ1BP86790 482 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 CCZ1P86791 482 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-214ENST00000495485 LRMPQ12912 555 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 MYBPC2Q14324 1141 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 LRRC41Q15345 812 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 XKR3Q5GH77 459 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 LHX8Q68G74 356 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 TAPT1Q6NXT6 567 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 EPM2AIP1Q7L775 607 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-214ENST00000495485 FRMD5Q7Z6J6 570 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 IRF2BP1Q8IU81 584 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 TMTC1Q8IUR5 882 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 NELFCDQ8IXH7 590 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 SYCP3Q8IZU3 236 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 TRPV1Q8NER1 839 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 SCFD1Q8WVM8 642 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 KIFAP3Q92845 792 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 ERGIC2Q96RQ1 377 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 RUSC1Q9BVN2 902 aa11.27□□□□□ -0.61
HDAC3-214ENST00000495485 NUCKS1Q9H1E3 243 aaKnown RBP11.27□□□□□ -0.61
HDAC3-214ENST00000495485 TMX1Q9H3N1 280 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms