RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 MROH7-TTC4A0A0A0MT08 1334 aa20.5■□□□□ 0.87
COL27A1-207ENST00000494090 CYP19A1P11511 503 aaPredicted RBP20.5■□□□□ 0.87
COL27A1-207ENST00000494090 GUCY2CP25092 1073 aa20.5■□□□□ 0.87
COL27A1-207ENST00000494090 TFDP2Q14188 446 aa20.5■□□□□ 0.87
COL27A1-207ENST00000494090 TMEM35BQ8NCS4 154 aa20.5■□□□□ 0.87
COL27A1-207ENST00000494090 RBM41Q96IZ5 413 aaKnown RBP20.5■□□□□ 0.87
COL27A1-207ENST00000494090 TRIM28Q13263 835 aaKnown RBP20.49■□□□□ 0.87
COL27A1-207ENST00000494090 KCNB1Q14721 858 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 NUGGCQ68CJ6 796 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 NSUN6Q8TEA1 469 aaKnown RBP20.49■□□□□ 0.87
COL27A1-207ENST00000494090 CEP95Q96GE4 821 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 PAMP19021 973 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 CAV1Q03135 178 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 SPOPLQ6IQ16 392 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 DCLK2Q8N568 766 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 OR6B3Q8NGW1 331 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 MMEP08473 750 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 KCNJ6P48051 423 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 ATG9AQ7Z3C6 839 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 C2orf40Q9H1Z8 148 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 CD209Q9NNX6 404 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 ANAPC7Q9UJX3 599 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 FBXO2Q9UK22 296 aaPredicted RBP20.49■□□□□ 0.87
COL27A1-207ENST00000494090 SPDYE2BA6NHP3 402 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 SPDYE6P0CI01 402 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 ATG16L1Q676U5 607 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 RCSD1Q6JBY9 416 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 RMDN3Q96TC7 470 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 CPVLQ9H3G5 476 aa20.49■□□□□ 0.87
COL27A1-207ENST00000494090 USP17L15C9J2P7 530 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 USP17L13C9JLJ4 530 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 USP17L11C9JVI0 530 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 USP17L18D6R9N7 530 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 USP17L22D6RA61 530 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 USP17L17D6RBQ6 530 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 USP17L19D6RCP7 530 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 USP17L20D6RJB6 530 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 USP17L24Q0WX57 530 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 USP17L6PQ6QN14 398 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 METTL16Q86W50 562 aaKnown RBP20.48■□□□□ 0.87
COL27A1-207ENST00000494090 TMEM260Q9NX78 707 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 ADAM22Q9P0K1 906 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 STRIP2Q9ULQ0 834 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 MORC2Q9Y6X9 1032 aaPredicted RBP20.48■□□□□ 0.87
COL27A1-207ENST00000494090 COL15A1P39059 1388 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 FOXN1O15353 648 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 TOM1L1O75674 476 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 PMLP29590 882 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 MAGEA9P43362 315 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 PADI6Q6TGC4 694 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 APOBEC3FQ8IUX4 373 aaKnown RBP20.48■□□□□ 0.87
COL27A1-207ENST00000494090 CFAP36Q96G28 342 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 EDEM3Q9BZQ6 932 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.48■□□□□ 0.87
COL27A1-207ENST00000494090 CAPN11Q9UMQ6 739 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 CLDN3O15551 220 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 PSMA2P25787 234 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 NAALADL2Q58DX5 795 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 SEL1LQ9UBV2 794 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 CRB1P82279 1406 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 USP17L10C9JJH3 530 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 CASP2P42575 452 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 NFRKBQ6P4R8 1299 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 BRINP3Q76B58 766 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 KLC2Q9H0B6 622 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 ABCA6Q8N139 1617 aa20.48■□□□□ 0.87
COL27A1-207ENST00000494090 PRPF38AQ8NAV1 312 aaKnown RBP20.47■□□□□ 0.87
COL27A1-207ENST00000494090 ELAC2Q9BQ52 826 aaKnown RBP20.47■□□□□ 0.87
COL27A1-207ENST00000494090 POTEB3A0JP26 581 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 POTECB2RU33 542 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 DNAJC8O75937 253 aaPredicted RBP20.47■□□□□ 0.87
COL27A1-207ENST00000494090 ZRANB2O95218 330 aaKnown RBP eCLIP20.47■□□□□ 0.87
COL27A1-207ENST00000494090 NR1H3Q13133 447 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 POTEBQ6S5H4 581 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 GNGT2O14610 69 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 CALB1P05937 261 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 SPARCL1Q14515 664 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 SLC44A5Q8NCS7 719 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 GINM1Q9NU53 330 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 NVLO15381 856 aaKnown RBP20.47■□□□□ 0.87
COL27A1-207ENST00000494090 DCTN3O75935 186 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 SCARA5Q6ZMJ2 495 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 DEPDC1BQ8WUY9 529 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 CELF1Q92879 486 aaKnown RBP20.47■□□□□ 0.87
COL27A1-207ENST00000494090 SPDL1Q96EA4 605 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.47■□□□□ 0.877e-10■■□□□ 13.1
COL27A1-207ENST00000494090 FAM49AQ9H0Q0 323 aaPredicted RBP20.47■□□□□ 0.87
COL27A1-207ENST00000494090 SAYSD1Q9NPB0 183 aa20.47■□□□□ 0.87
COL27A1-207ENST00000494090 PITPNM3Q9BZ71 974 aa20.46■□□□□ 0.87
COL27A1-207ENST00000494090 LIMA1Q9UHB6 759 aaKnown RBP20.46■□□□□ 0.87
COL27A1-207ENST00000494090 MYL3P08590 195 aa20.46■□□□□ 0.87
COL27A1-207ENST00000494090 ESRRAP11474 423 aaPredicted RBP20.46■□□□□ 0.87
COL27A1-207ENST00000494090 PAPOLAP51003 745 aaKnown RBP20.46■□□□□ 0.87
COL27A1-207ENST00000494090 DNAJC17Q9NVM6 304 aaKnown RBP20.46■□□□□ 0.87
COL27A1-207ENST00000494090 ARHGEF40Q8TER5 1519 aa20.46■□□□□ 0.87
COL27A1-207ENST00000494090 TARSL2A2RTX5 802 aaKnown RBP20.46■□□□□ 0.87
COL27A1-207ENST00000494090 C21orf2O43822 256 aa20.46■□□□□ 0.87
COL27A1-207ENST00000494090 SOX5P35711 763 aa20.46■□□□□ 0.87
COL27A1-207ENST00000494090 GCLMP48507 274 aa20.46■□□□□ 0.87
COL27A1-207ENST00000494090 ARL4CP56559 192 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms