RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 BAG2O95816 211 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 ATF7P17544 494 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 CCND2P30279 289 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 HDLBPQ00341 1268 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 PTF1AQ7RTS3 328 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 ITIH6Q6UXX5 1313 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 ENO4A6NNW6 628 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 H0Y3Z8 333 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 TMOD1P28289 359 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 ADCY8P40145 1251 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 CARSP49589 748 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 PRPF38AQ8NAV1 312 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 ZNF653Q96CK0 615 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 CHMP6Q96FZ7 201 aa17.56■□□□□ 0.4
CCDC88B-209ENST00000494080 ORC2Q13416 577 aaPredicted RBP17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 KNOP1Q1ED39 458 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 LDHDQ86WU2 507 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 PROM2Q8N271 834 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 CDHR1Q96JP9 859 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 MYMKA6NI61 221 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 DRP2Q13474 957 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 SNRNP48Q6IEG0 339 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 EIF2AK1Q9BQI3 630 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 TBK1Q9UHD2 729 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 ATP2A2P16615 1042 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 SLC8A3P57103 927 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 OSTNP61366 133 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 RNF146Q9NTX7 359 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 RBM12Q9NTZ6 932 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 FEM1BQ9UK73 627 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 FBXL5Q9UKA1 691 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 PHF20L1A8MW92 1017 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 PDIA5Q14554 519 aa17.55■□□□□ 0.4
CCDC88B-209ENST00000494080 OPHN1O60890 802 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 FGGP02679 453 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 MARK3P27448 753 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 GCLMP48507 274 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 RASA3Q14644 834 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 ILDR1Q86SU0 546 aaPredicted RBP17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 TAB3Q8N5C8 712 aaPredicted RBP17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 OR2W6PQ8NHA6 318 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 SNX24Q9Y343 169 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 PCDHB4Q9Y5E5 795 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 PASKQ96RG2 1323 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 CCDC188H7C350 402 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 TNNC2P02585 160 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 PDHA1P08559 390 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 MKRN3Q13064 507 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 FAM160B1Q5W0V3 765 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 ZNF449Q6P9G9 518 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 SCYL3Q8IZE3 742 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 CYFIP2Q96F07 1278 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 PPP1R16BQ96T49 567 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 DMGDHQ9UI17 866 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 HPSEQ9Y251 543 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 YARSP54577 528 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 DR1Q01658 176 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 MIS18BP1Q6P0N0 1132 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 TRAPPC11Q7Z392 1133 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 VCX3BQ9H321 246 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 FAM217BQ9NTX9 383 aaPredicted RBP17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 CAMTA1Q9Y6Y1 1673 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 EARS2Q5JPH6 523 aaKnown RBP17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 KAZNQ674X7 775 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 P3H4Q92791 437 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 LXNQ9BS40 222 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 EHD4Q9H223 541 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 MLXIPLQ9NP71 852 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 DNAJC12Q9UKB3 198 aa17.54■□□□□ 0.4
CCDC88B-209ENST00000494080 SLC16A4O15374 487 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 FAM107AO95990 144 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 IL9RQ01113 521 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 PKN1Q16512 942 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 PTGISQ16647 500 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 CEP55Q53EZ4 464 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 LRRC8CQ8TDW0 803 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 EHD2Q9NZN4 543 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 SCOCQ9UIL1 159 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 GGT7Q9UJ14 662 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 USH1CQ9Y6N9 552 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 RHOBTB3O94955 611 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 TFAMQ00059 246 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 LRP10Q7Z4F1 713 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 ZBTB33Q86T24 672 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 GBP7Q8N8V2 638 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 CFAP61Q8NHU2 1237 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 CCDC97Q96F63 343 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 RTFDC1Q9BY42 306 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 DONSONQ9NYP3 566 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 NYAP2Q9P242 653 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 TXNDC16Q9P2K2 825 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 PRR12Q9ULL5 1215 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 PDS5AQ29RF7 1337 aaKnown RBP17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 PALM3A6NDB9 673 aaPredicted RBP17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 SRGAP2CP0DJJ0 459 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 PPP1R21Q6ZMI0 780 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 SGSM3Q96HU1 749 aa17.53■□□□□ 0.4
CCDC88B-209ENST00000494080 K7ERI5 159 aa17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 C6orf118Q5T5N4 469 aa17.52■□□□□ 0.4
CCDC88B-209ENST00000494080 CEP128Q6ZU80 1094 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms