RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 FGFR4P22455 802 aa27.61■■■□□ 2.01
UPF3A-209ENST00000492270 EIF4BP23588 611 aaKnown RBP27.61■■■□□ 2.01
UPF3A-209ENST00000492270 ODR4Q5SWX8 454 aa27.61■■■□□ 2.01
UPF3A-209ENST00000492270 NPAS4Q8IUM7 802 aa27.61■■■□□ 2.01
UPF3A-209ENST00000492270 FBXO22Q8NEZ5 403 aa27.61■■■□□ 2.01
UPF3A-209ENST00000492270 HSD17B14Q9BPX1 270 aa27.61■■■□□ 2.01
UPF3A-209ENST00000492270 SUCLA2Q9P2R7 463 aaPredicted RBP27.61■■■□□ 2.01
UPF3A-209ENST00000492270 GTPBP6O43824 516 aaPredicted RBP27.6■■■□□ 2.01
UPF3A-209ENST00000492270 OR52Z1P0C646 297 aa27.6■■■□□ 2.01
UPF3A-209ENST00000492270 LINC00271P0C7V0 271 aa27.6■■■□□ 2.01
UPF3A-209ENST00000492270 DARSP14868 501 aaKnown RBP27.6■■■□□ 2.01
UPF3A-209ENST00000492270 SARSP49591 514 aaKnown RBP27.6■■■□□ 2.01
UPF3A-209ENST00000492270 GATMP50440 423 aa27.6■■■□□ 2.01
UPF3A-209ENST00000492270 POLGP54098 1239 aaPredicted RBP27.6■■■□□ 2.01
UPF3A-209ENST00000492270 DSC3Q14574 896 aa27.6■■■□□ 2.01
UPF3A-209ENST00000492270 EPC2Q52LR7 807 aa27.6■■■□□ 2.01
UPF3A-209ENST00000492270 RHPN2Q8IUC4 686 aa27.6■■■□□ 2.01
UPF3A-209ENST00000492270 KSR1Q8IVT5 923 aa27.6■■■□□ 2.01
UPF3A-209ENST00000492270 FIBCD1Q8N539 461 aa27.6■■■□□ 2.01
UPF3A-209ENST00000492270 RGS18Q9NS28 235 aa27.6■■■□□ 2.01
UPF3A-209ENST00000492270 KIF3AQ9Y496 699 aa27.6■■■□□ 2.01
UPF3A-209ENST00000492270 A0A0C4DFX4 3053 aa27.6■■■□□ 2.01
UPF3A-209ENST00000492270 A0A087WZ62 844 aa27.59■■■□□ 2.01
UPF3A-209ENST00000492270 DNM2P50570 870 aa27.59■■■□□ 2.01
UPF3A-209ENST00000492270 TOB1P50616 345 aaPredicted RBP27.59■■■□□ 2.01
UPF3A-209ENST00000492270 ORC2Q13416 577 aaPredicted RBP27.59■■■□□ 2.01
UPF3A-209ENST00000492270 XKR9Q5GH70 373 aa27.59■■■□□ 2.01
UPF3A-209ENST00000492270 TMEM192Q8IY95 271 aa27.59■■■□□ 2.01
UPF3A-209ENST00000492270 SLC7A3Q8WY07 619 aa27.59■■■□□ 2.01
UPF3A-209ENST00000492270 FDXACB1Q9BRP7 624 aaPredicted RBP27.59■■■□□ 2.01
UPF3A-209ENST00000492270 DHX33Q9H6R0 707 aaKnown RBP27.59■■■□□ 2.01
UPF3A-209ENST00000492270 NOL7Q9UMY1 257 aaKnown RBP27.59■■■□□ 2.01
UPF3A-209ENST00000492270 A0A087WWV3 80 aa27.58■■■□□ 2.01
UPF3A-209ENST00000492270 C9IYK1 514 aa27.58■■■□□ 2.01
UPF3A-209ENST00000492270 STAG3L1P0CL83 205 aa27.58■■■□□ 2.01
UPF3A-209ENST00000492270 TECP42680 631 aa27.58■■■□□ 2.01
UPF3A-209ENST00000492270 TRAPPC10P48553 1259 aa27.58■■■□□ 2.01
UPF3A-209ENST00000492270 BTG3Q14201 252 aaPredicted RBP27.58■■■□□ 2.01
UPF3A-209ENST00000492270 PAN2Q504Q3 1202 aaKnown RBP27.58■■■□□ 2.01
UPF3A-209ENST00000492270 OTUD6AQ7L8S5 288 aa27.58■■■□□ 2.01
UPF3A-209ENST00000492270 ZNF710Q8N1W2 664 aa27.58■■■□□ 2.01
UPF3A-209ENST00000492270 NEK9Q8TD19 979 aa27.58■■■□□ 2.01
UPF3A-209ENST00000492270 TMEM143Q96AN5 459 aa27.58■■■□□ 2.01
UPF3A-209ENST00000492270 JPH2Q9BR39 696 aaPredicted RBP27.58■■■□□ 2.01
UPF3A-209ENST00000492270 LRFN2Q9ULH4 789 aa27.58■■■□□ 2.01
UPF3A-209ENST00000492270 LYPLA2O95372 231 aa27.57■■■□□ 2
UPF3A-209ENST00000492270 RFC5P40937 340 aa27.57■■■□□ 2
UPF3A-209ENST00000492270 EMC2Q15006 297 aa27.57■■■□□ 2
UPF3A-209ENST00000492270 MCTP1Q6DN14 999 aa27.57■■■□□ 2
UPF3A-209ENST00000492270 SLC24A5Q71RS6 500 aa27.57■■■□□ 2
UPF3A-209ENST00000492270 C4orf32Q8N8J7 132 aa27.57■■■□□ 2
UPF3A-209ENST00000492270 NLRP4Q96MN2 994 aa27.57■■■□□ 2
UPF3A-209ENST00000492270 SAMD11Q96NU1 681 aa27.57■■■□□ 2
UPF3A-209ENST00000492270 C1orf112Q9NSG2 853 aa27.57■■■□□ 2
UPF3A-209ENST00000492270 PPME1Q9Y570 386 aa27.57■■■□□ 2
UPF3A-209ENST00000492270 PCDHB6Q9Y5E3 794 aa27.57■■■□□ 2
UPF3A-209ENST00000492270 PLXNA4Q9HCM2 1894 aa27.57■■■□□ 2
UPF3A-209ENST00000492270 SPATA31C1P0DKV0 1188 aa27.56■■■□□ 2
UPF3A-209ENST00000492270 CTNNB1P35222 781 aa27.56■■■□□ 2
UPF3A-209ENST00000492270 GCOM2Q9BZD3 368 aaPredicted RBP27.56■■■□□ 2
UPF3A-209ENST00000492270 SMC3Q9UQE7 1217 aa27.56■■■□□ 2
UPF3A-209ENST00000492270 MRPL42Q9Y6G3 142 aaKnown RBP27.56■■■□□ 2
UPF3A-209ENST00000492270 MED24O75448 989 aa27.55■■■□□ 2
UPF3A-209ENST00000492270 ZNF410Q86VK4 478 aa27.55■■■□□ 2
UPF3A-209ENST00000492270 CMTR2Q8IYT2 770 aaKnown RBP27.55■■■□□ 2
UPF3A-209ENST00000492270 PIGOQ8TEQ8 1089 aa27.55■■■□□ 2
UPF3A-209ENST00000492270 XPNPEP1Q9NQW7 623 aa27.55■■■□□ 2
UPF3A-209ENST00000492270 PCDHB7Q9Y5E2 793 aa27.55■■■□□ 2
UPF3A-209ENST00000492270 COL4A3BPQ9Y5P4 624 aa27.55■■■□□ 2
UPF3A-209ENST00000492270 CDC42EP1Q00587 391 aa27.54■■■□□ 2
UPF3A-209ENST00000492270 GPM6BQ13491 265 aa27.54■■■□□ 2
UPF3A-209ENST00000492270 CATSPER3Q86XQ3 398 aa27.54■■■□□ 2
UPF3A-209ENST00000492270 PRPF31Q8WWY3 499 aaKnown RBP27.54■■■□□ 2
UPF3A-209ENST00000492270 CLP1Q92989 425 aaKnown RBP27.54■■■□□ 2
UPF3A-209ENST00000492270 H3BNC9 293 aa27.53■■■□□ 2
UPF3A-209ENST00000492270 FAM102BQ5T8I3 360 aa27.53■■■□□ 2
UPF3A-209ENST00000492270 FAM43BQ6ZT52 329 aaPredicted RBP27.53■■■□□ 2
UPF3A-209ENST00000492270 PSPC1Q8WXF1 523 aaKnown RBP27.53■■■□□ 2
UPF3A-209ENST00000492270 MTRQ99707 1265 aa27.53■■■□□ 2
UPF3A-209ENST00000492270 IFT122Q9HBG6 1241 aa27.53■■■□□ 2
UPF3A-209ENST00000492270 ANKEF1Q9NU02 776 aa27.53■■■□□ 2
UPF3A-209ENST00000492270 ZSCAN21Q9Y5A6 473 aaPredicted RBP27.53■■■□□ 2
UPF3A-209ENST00000492270 SPTBN5Q9NRC6 3674 aaKnown RBP27.53■■■□□ 2
UPF3A-209ENST00000492270 H3BQV1 296 aa27.52■■■□□ 2
UPF3A-209ENST00000492270 FGFR1P11362 822 aa27.52■■■□□ 2
UPF3A-209ENST00000492270 ZSCAN20P17040 1043 aaPredicted RBP27.52■■■□□ 2
UPF3A-209ENST00000492270 BMPR1AP36894 532 aa27.52■■■□□ 2
UPF3A-209ENST00000492270 RARRES1P49788 294 aa27.52■■■□□ 2
UPF3A-209ENST00000492270 FAM189BP81408 668 aa27.52■■■□□ 2
UPF3A-209ENST00000492270 PTGDRQ13258 359 aa27.52■■■□□ 2
UPF3A-209ENST00000492270 EXOC8Q8IYI6 725 aa27.52■■■□□ 2
UPF3A-209ENST00000492270 TUFT1Q9NNX1 390 aa27.52■■■□□ 2
UPF3A-209ENST00000492270 TMEM161AQ9NX61 479 aa27.52■■■□□ 2
UPF3A-209ENST00000492270 LMCD1Q9NZU5 365 aa27.52■■■□□ 2
UPF3A-209ENST00000492270 SRGAP2CP0DJJ0 459 aa27.51■■□□□ 1.99
UPF3A-209ENST00000492270 LAMTOR4Q0VGL1 99 aa27.51■■□□□ 1.99
UPF3A-209ENST00000492270 CUL4AQ13619 759 aa27.51■■□□□ 1.99
UPF3A-209ENST00000492270 SKIV2LQ15477 1246 aaKnown RBP27.51■■□□□ 1.99
UPF3A-209ENST00000492270 POTEGQ6S5H5 508 aa27.51■■□□□ 1.99
UPF3A-209ENST00000492270 CCDC43Q96MW1 224 aaKnown RBP27.51■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms