RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 NDUFV1P49821 464 aa15.36■□□□□ 0.05
COL6A3-211ENST00000491233 DRP2Q13474 957 aa15.36■□□□□ 0.05
COL6A3-211ENST00000491233 TARBP2Q15633 366 aaKnown RBP15.36■□□□□ 0.05
COL6A3-211ENST00000491233 B3GNT9Q6UX72 402 aa15.36■□□□□ 0.05
COL6A3-211ENST00000491233 KRT25Q7Z3Z0 450 aa15.36■□□□□ 0.05
COL6A3-211ENST00000491233 ETNPPLQ8TBG4 499 aa15.36■□□□□ 0.05
COL6A3-211ENST00000491233 PRKAG3Q9UGI9 489 aa15.36■□□□□ 0.05
COL6A3-211ENST00000491233 DDX25Q9UHL0 483 aaKnown RBP15.36■□□□□ 0.05
COL6A3-211ENST00000491233 STK36Q9NRP7 1315 aa15.36■□□□□ 0.05
COL6A3-211ENST00000491233 SLC37A4O43826 429 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 DTNBO60941 627 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 DARSP14868 501 aaKnown RBP15.35■□□□□ 0.05
COL6A3-211ENST00000491233 NRIP1P48552 1158 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 FAM189BP81408 668 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 ADAM15Q13444 863 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 SMAD4Q13485 552 aaKnown RBP15.35■□□□□ 0.05
COL6A3-211ENST00000491233 LETM2Q2VYF4 491 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 XKR3Q5GH77 459 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 THNSL1Q8IYQ7 743 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 ZNF710Q8N1W2 664 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 COLGALT1Q8NBJ5 622 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 NLRP7Q8WX94 980 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 SH2D3AQ9BRG2 576 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 PHF20Q9BVI0 1012 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 TMEM117Q9H0C3 514 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 SLKQ9H2G2 1235 aaPredicted RBP15.35■□□□□ 0.05
COL6A3-211ENST00000491233 RNF19AQ9NV58 838 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 TYW1Q9NV66 732 aaKnown RBP15.35■□□□□ 0.05
COL6A3-211ENST00000491233 CD207Q9UJ71 328 aa15.35■□□□□ 0.05
COL6A3-211ENST00000491233 CCDC194A0A1B0GVG4 234 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 HOXA2O43364 376 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 FGF18O76093 207 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 STBD1O95210 358 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 ZSCAN20P17040 1043 aaPredicted RBP15.34■□□□□ 0.05
COL6A3-211ENST00000491233 LAG3P18627 525 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 FGFR4P22455 802 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 UBE3AQ05086 875 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 SMAD2Q15796 467 aaKnown RBP15.34■□□□□ 0.05
COL6A3-211ENST00000491233 RBM23Q86U06 439 aaKnown RBP15.34■□□□□ 0.05
COL6A3-211ENST00000491233 ECHDC2Q86YB7 292 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 ADHFE1Q8IWW8 467 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 LRRC43Q8N309 656 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 EFHBQ8N7U6 833 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 NIFKQ9BYG3 293 aaKnown RBP15.34■□□□□ 0.05
COL6A3-211ENST00000491233 CWH43Q9H720 699 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 TLR9Q9NR96 1032 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 GJB4Q9NTQ9 266 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 TPCN1Q9ULQ1 816 aa15.34■□□□□ 0.05
COL6A3-211ENST00000491233 C19orf67A6NJJ6 358 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 PFKFB2O60825 505 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 GPR37L1O60883 481 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 GLP2RO95838 553 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 CSPP1Q1MSJ5 1256 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 PLA2G4FQ68DD2 849 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 NEK8Q86SG6 692 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 ABI1Q8IZP0 508 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 RNF169Q8NCN4 708 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 MICAL1Q8TDZ2 1067 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 MSLNLQ96KJ4 702 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 CASD1Q96PB1 797 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 CEP89Q96ST8 783 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 VAV3Q9UKW4 847 aa15.33■□□□□ 0.04
COL6A3-211ENST00000491233 BARX2Q9UMQ3 279 aaPredicted RBP15.33■□□□□ 0.04
COL6A3-211ENST00000491233 IGKV6-21A0A0C4DH24 114 aa15.32■□□□□ 0.04
COL6A3-211ENST00000491233 EML1O00423 815 aa15.32■□□□□ 0.04
COL6A3-211ENST00000491233 CSDE1O75534 798 aaKnown RBP15.32■□□□□ 0.04
COL6A3-211ENST00000491233 XBP1P17861 261 aa15.32■□□□□ 0.04
COL6A3-211ENST00000491233 AK2P54819 239 aa15.32■□□□□ 0.04
COL6A3-211ENST00000491233 PSMC5P62195 406 aa15.32■□□□□ 0.04
COL6A3-211ENST00000491233 CLLU1OSQ5K130 101 aa15.32■□□□□ 0.04
COL6A3-211ENST00000491233 LRRC55Q6ZSA7 311 aa15.32■□□□□ 0.04
COL6A3-211ENST00000491233 OXER1Q8TDS5 423 aa15.32■□□□□ 0.04
COL6A3-211ENST00000491233 POP1Q99575 1024 aaKnown RBP15.32■□□□□ 0.04
COL6A3-211ENST00000491233 GCOM2Q9BZD3 368 aaPredicted RBP15.32■□□□□ 0.04
COL6A3-211ENST00000491233 TLE6Q9H808 572 aa15.32■□□□□ 0.04
COL6A3-211ENST00000491233 KCNMB3Q9NPA1 279 aa15.32■□□□□ 0.04
COL6A3-211ENST00000491233 CLEC1BQ9P126 229 aa15.32■□□□□ 0.04
COL6A3-211ENST00000491233 HCN4Q9Y3Q4 1203 aa15.32■□□□□ 0.04
COL6A3-211ENST00000491233 A0A087WZ62 844 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 DDX11L8A8MPP1 907 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 FSCN2O14926 492 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 PER2O15055 1255 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 DCXO43602 365 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 CTDNEP1O95476 244 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 ALADP13716 330 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 GCFC2P16383 781 aaKnown RBP15.31■□□□□ 0.04
COL6A3-211ENST00000491233 ATF7P17544 494 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-211ENST00000491233 PLA2G5P39877 138 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 PBX3P40426 434 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 ANAPC15P60006 121 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 ERVFC1P60507 584 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 PPP2R5CQ13362 524 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 PLPP4Q5VZY2 271 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 KCNT2Q6UVM3 1135 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 PIK3AP1Q6ZUJ8 805 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 ANO5Q75V66 913 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 SMRP1Q8NCR6 262 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 MRPS27Q92552 414 aaKnown RBP15.31■□□□□ 0.04
COL6A3-211ENST00000491233 ZNF558Q96NG5 402 aa15.31■□□□□ 0.04
COL6A3-211ENST00000491233 FDXACB1Q9BRP7 624 aaPredicted RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms