RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 ZNF579Q8NAF0 562 aaKnown RBP22.87■■□□□ 1.25
HDAC4-209ENST00000487617 SLC7A3Q8WY07 619 aa22.87■■□□□ 1.25
HDAC4-209ENST00000487617 THEGQ9P2T0 379 aa22.87■■□□□ 1.25
HDAC4-209ENST00000487617 KIF3AQ9Y496 699 aa22.87■■□□□ 1.25
HDAC4-209ENST00000487617 PPME1Q9Y570 386 aa22.87■■□□□ 1.25
HDAC4-209ENST00000487617 TTC3P53804 2025 aa22.87■■□□□ 1.25
HDAC4-209ENST00000487617 SLITRK3O94933 977 aa22.86■■□□□ 1.25
HDAC4-209ENST00000487617 CTNNB1P35222 781 aa22.86■■□□□ 1.25
HDAC4-209ENST00000487617 MCM2P49736 904 aa22.86■■□□□ 1.25
HDAC4-209ENST00000487617 POLGP54098 1239 aaPredicted RBP22.86■■□□□ 1.25
HDAC4-209ENST00000487617 GPM6BQ13491 265 aa22.86■■□□□ 1.25
HDAC4-209ENST00000487617 RHPN2Q8IUC4 686 aa22.86■■□□□ 1.25
HDAC4-209ENST00000487617 EXOC8Q8IYI6 725 aa22.86■■□□□ 1.25
HDAC4-209ENST00000487617 CMTR2Q8IYT2 770 aaKnown RBP22.86■■□□□ 1.25
HDAC4-209ENST00000487617 GCOM2Q9BZD3 368 aaPredicted RBP22.86■■□□□ 1.25
HDAC4-209ENST00000487617 RNF216Q9NWF9 866 aaPredicted RBP22.86■■□□□ 1.25
HDAC4-209ENST00000487617 RWDD3Q9Y3V2 267 aa22.86■■□□□ 1.25
HDAC4-209ENST00000487617 EYSQ5T1H1 3165 aa22.86■■□□□ 1.25
HDAC4-209ENST00000487617 LOXHD1Q8IVV2 1947 aa22.86■■□□□ 1.25
HDAC4-209ENST00000487617 PRRC2BQ5JSZ5 2229 aaKnown RBP22.85■■□□□ 1.25
HDAC4-209ENST00000487617 C9IYK1 514 aa22.85■■□□□ 1.25
HDAC4-209ENST00000487617 H3BNC9 293 aa22.85■■□□□ 1.25
HDAC4-209ENST00000487617 ZSCAN20P17040 1043 aaPredicted RBP22.85■■□□□ 1.25
HDAC4-209ENST00000487617 FGFR4P22455 802 aa22.85■■□□□ 1.25
HDAC4-209ENST00000487617 DSC3Q14574 896 aa22.85■■□□□ 1.25
HDAC4-209ENST00000487617 PAN2Q504Q3 1202 aaKnown RBP22.85■■□□□ 1.25
HDAC4-209ENST00000487617 XKR9Q5GH70 373 aa22.85■■□□□ 1.25
HDAC4-209ENST00000487617 TTC38Q5R3I4 469 aa22.85■■□□□ 1.25
HDAC4-209ENST00000487617 NEK9Q8TD19 979 aa22.85■■□□□ 1.25
HDAC4-209ENST00000487617 HSD17B14Q9BPX1 270 aa22.85■■□□□ 1.25
HDAC4-209ENST00000487617 NOL7Q9UMY1 257 aaKnown RBP22.85■■□□□ 1.25
HDAC4-209ENST00000487617 COL4A4P53420 1690 aaPredicted RBP22.84■■□□□ 1.25
HDAC4-209ENST00000487617 A0A087WZ62 844 aa22.84■■□□□ 1.25
HDAC4-209ENST00000487617 ZBTB39O15060 712 aa22.84■■□□□ 1.25
HDAC4-209ENST00000487617 CSDE1O75534 798 aaKnown RBP22.84■■□□□ 1.25
HDAC4-209ENST00000487617 BMPR1AP36894 532 aa22.84■■□□□ 1.25
HDAC4-209ENST00000487617 RFC5P40937 340 aa22.84■■□□□ 1.25
HDAC4-209ENST00000487617 GATMP50440 423 aa22.84■■□□□ 1.25
HDAC4-209ENST00000487617 ORC2Q13416 577 aaPredicted RBP22.84■■□□□ 1.25
HDAC4-209ENST00000487617 PTPROQ16827 1216 aa22.84■■□□□ 1.25
HDAC4-209ENST00000487617 CLP1Q92989 425 aaKnown RBP22.84■■□□□ 1.25
HDAC4-209ENST00000487617 NLRP4Q96MN2 994 aa22.84■■□□□ 1.25
HDAC4-209ENST00000487617 FDXACB1Q9BRP7 624 aaPredicted RBP22.84■■□□□ 1.25
HDAC4-209ENST00000487617 DHX33Q9H6R0 707 aaKnown RBP22.84■■□□□ 1.25
HDAC4-209ENST00000487617 BMP2KQ9NSY1 1161 aaPredicted RBP22.84■■□□□ 1.25
HDAC4-209ENST00000487617 POTEMA6NI47 508 aa22.83■■□□□ 1.25
HDAC4-209ENST00000487617 RB1P06400 928 aa22.83■■□□□ 1.25
HDAC4-209ENST00000487617 LINC00271P0C7V0 271 aa22.83■■□□□ 1.25
HDAC4-209ENST00000487617 TRAPPC10P48553 1259 aa22.83■■□□□ 1.25
HDAC4-209ENST00000487617 ZNF410Q86VK4 478 aa22.83■■□□□ 1.25
HDAC4-209ENST00000487617 KSR1Q8IVT5 923 aa22.83■■□□□ 1.25
HDAC4-209ENST00000487617 ATXN2LQ8WWM7 1075 aaKnown RBP22.83■■□□□ 1.25
HDAC4-209ENST00000487617 MRPL38Q96DV4 380 aaKnown RBP22.83■■□□□ 1.25
HDAC4-209ENST00000487617 ATP6V0A4Q9HBG4 840 aa22.83■■□□□ 1.25
HDAC4-209ENST00000487617 MRPL42Q9Y6G3 142 aaKnown RBP22.83■■□□□ 1.25
HDAC4-209ENST00000487617 LYPLA2O95372 231 aa22.82■■□□□ 1.24
HDAC4-209ENST00000487617 OR52Z1P0C646 297 aa22.82■■□□□ 1.24
HDAC4-209ENST00000487617 U2AF2P26368 475 aaKnown RBP eCLIP22.82■■□□□ 1.24
HDAC4-209ENST00000487617 FAM189BP81408 668 aa22.82■■□□□ 1.24
HDAC4-209ENST00000487617 EMC2Q15006 297 aa22.82■■□□□ 1.24
HDAC4-209ENST00000487617 PSPC1Q8WXF1 523 aaKnown RBP22.82■■□□□ 1.24
HDAC4-209ENST00000487617 TMEM143Q96AN5 459 aa22.82■■□□□ 1.24
HDAC4-209ENST00000487617 C11orf84Q9BUA3 381 aaPredicted RBP22.82■■□□□ 1.24
HDAC4-209ENST00000487617 INO80BQ9C086 356 aaPredicted RBP22.82■■□□□ 1.24
HDAC4-209ENST00000487617 TMEM161AQ9NX61 479 aa22.82■■□□□ 1.24
HDAC4-209ENST00000487617 COL4A3BPQ9Y5P4 624 aa22.82■■□□□ 1.24
HDAC4-209ENST00000487617 C5orf67F2Z3F1 127 aa22.81■■□□□ 1.24
HDAC4-209ENST00000487617 GAS2O43903 313 aaKnown RBP22.81■■□□□ 1.24
HDAC4-209ENST00000487617 SFPQP23246 707 aaKnown RBP eCLIP22.81■■□□□ 1.24
HDAC4-209ENST00000487617 GJB2P29033 226 aa22.81■■□□□ 1.24
HDAC4-209ENST00000487617 TECP42680 631 aa22.81■■□□□ 1.24
HDAC4-209ENST00000487617 MRPS5P82675 430 aaKnown RBP22.81■■□□□ 1.24
HDAC4-209ENST00000487617 NBR1Q14596 966 aa22.81■■□□□ 1.24
HDAC4-209ENST00000487617 TJAP1Q5JTD0 557 aa22.81■■□□□ 1.24
HDAC4-209ENST00000487617 FAM102BQ5T8I3 360 aa22.81■■□□□ 1.24
HDAC4-209ENST00000487617 TCP11Q8WWU5 503 aa22.81■■□□□ 1.24
HDAC4-209ENST00000487617 PRPF31Q8WWY3 499 aaKnown RBP22.81■■□□□ 1.24
HDAC4-209ENST00000487617 COL25A1Q9BXS0 654 aaPredicted RBP22.81■■□□□ 1.24
HDAC4-209ENST00000487617 ELAC1Q9H777 363 aaKnown RBP22.81■■□□□ 1.24
HDAC4-209ENST00000487617 ANKEF1Q9NU02 776 aa22.81■■□□□ 1.24
HDAC4-209ENST00000487617 PRUNE2Q8WUY3 3088 aa22.8■■□□□ 1.24
HDAC4-209ENST00000487617 TBKBP1A7MCY6 615 aa22.8■■□□□ 1.24
HDAC4-209ENST00000487617 MCTP1Q6DN14 999 aa22.8■■□□□ 1.24
HDAC4-209ENST00000487617 CCDC43Q96MW1 224 aaKnown RBP22.8■■□□□ 1.24
HDAC4-209ENST00000487617 ASB2Q96Q27 587 aa22.8■■□□□ 1.24
HDAC4-209ENST00000487617 MTRQ99707 1265 aa22.8■■□□□ 1.24
HDAC4-209ENST00000487617 PLVAPQ9BX97 442 aa22.8■■□□□ 1.24
HDAC4-209ENST00000487617 SRGAP2CP0DJJ0 459 aa22.79■■□□□ 1.24
HDAC4-209ENST00000487617 FGFR1P11362 822 aa22.79■■□□□ 1.24
HDAC4-209ENST00000487617 LAMTOR4Q0VGL1 99 aa22.79■■□□□ 1.24
HDAC4-209ENST00000487617 ECHDC2Q86YB7 292 aa22.79■■□□□ 1.24
HDAC4-209ENST00000487617 PIGOQ8TEQ8 1089 aa22.79■■□□□ 1.24
HDAC4-209ENST00000487617 DACT1Q9NYF0 836 aa22.79■■□□□ 1.24
HDAC4-209ENST00000487617 SMC3Q9UQE7 1217 aa22.79■■□□□ 1.24
HDAC4-209ENST00000487617 A0A087WWV3 80 aa22.78■■□□□ 1.24
HDAC4-209ENST00000487617 GRM6O15303 877 aa22.78■■□□□ 1.24
HDAC4-209ENST00000487617 SPATA31C1P0DKV0 1188 aa22.78■■□□□ 1.24
HDAC4-209ENST00000487617 TOB1P50616 345 aaPredicted RBP22.78■■□□□ 1.24
HDAC4-209ENST00000487617 TFF2Q03403 129 aa22.78■■□□□ 1.24
HDAC4-209ENST00000487617 TIGD5Q53EQ6 642 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms