RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 KRT85P78386 507 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 CEBPZQ03701 1054 aaKnown RBP16.27■□□□□ 0.2
LIMS3-205ENST00000487150 POU5F1BQ06416 359 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 PPP2R5AQ15172 486 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 FAM173BQ6P4H8 233 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 PADI6Q6TGC4 694 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 RHPN2Q8IUC4 686 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 KIFAP3Q92845 792 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 NLRP4Q96MN2 994 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 OSMRQ99650 979 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 SH2D3AQ9BRG2 576 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 CCSER1Q9C0I3 900 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 BHMT2Q9H2M3 363 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 ADAMTS10Q9H324 1103 aa16.27■□□□□ 0.2
LIMS3-205ENST00000487150 FBXO2Q9UK22 296 aaPredicted RBP16.27■□□□□ 0.2
LIMS3-205ENST00000487150 MYH9P35579 1960 aaKnown RBP16.27■□□□□ 0.19
LIMS3-205ENST00000487150 PHLPP2Q6ZVD8 1323 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 PP2D1A8MPX8 630 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 CYP11B2P19099 503 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 MARCKSP29966 332 aaPredicted RBP16.26■□□□□ 0.19
LIMS3-205ENST00000487150 ZRSR1Q15695 479 aaKnown RBP16.26■□□□□ 0.19
LIMS3-205ENST00000487150 TMEM119Q4V9L6 283 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 FOXD4L5Q5VV16 416 aaPredicted RBP16.26■□□□□ 0.19
LIMS3-205ENST00000487150 SRGAP1Q7Z6B7 1085 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 ZNF579Q8NAF0 562 aaKnown RBP16.26■□□□□ 0.19
LIMS3-205ENST00000487150 FOXD4L4Q8WXT5 416 aaPredicted RBP16.26■□□□□ 0.19
LIMS3-205ENST00000487150 VWCEQ96DN2 955 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 DRC1Q96MC2 740 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 MMTAG2Q9BU76 263 aaKnown RBP16.26■□□□□ 0.19
LIMS3-205ENST00000487150 C1orf112Q9NSG2 853 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 PCDH10Q9P2E7 1040 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 KCNG1Q9UIX4 513 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 MSRAQ9UJ68 235 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 PADI3Q9ULW8 664 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 KAT6AQ92794 2004 aa16.26■□□□□ 0.19
LIMS3-205ENST00000487150 ZBTB39O15060 712 aa16.25■□□□□ 0.19
LIMS3-205ENST00000487150 CD52P31358 61 aa16.25■□□□□ 0.19
LIMS3-205ENST00000487150 NCBP1Q09161 790 aaKnown RBP16.25■□□□□ 0.19
LIMS3-205ENST00000487150 LAMTOR4Q0VGL1 99 aa16.25■□□□□ 0.19
LIMS3-205ENST00000487150 NFX1Q12986 1120 aaKnown RBP16.25■□□□□ 0.19
LIMS3-205ENST00000487150 MKRN4PQ13434 485 aaPredicted RBP16.25■□□□□ 0.19
LIMS3-205ENST00000487150 PKP1Q13835 747 aa16.25■□□□□ 0.19
LIMS3-205ENST00000487150 PRPF31Q8WWY3 499 aaKnown RBP16.25■□□□□ 0.19
LIMS3-205ENST00000487150 TMEM143Q96AN5 459 aa16.25■□□□□ 0.19
LIMS3-205ENST00000487150 PYM1Q9BRP8 204 aaKnown RBP16.25■□□□□ 0.19
LIMS3-205ENST00000487150 NFKBIZQ9BYH8 718 aa16.25■□□□□ 0.19
LIMS3-205ENST00000487150 CSRNP2Q9H175 543 aa16.25■□□□□ 0.19
LIMS3-205ENST00000487150 C17orf75Q9HAS0 396 aa16.25■□□□□ 0.19
LIMS3-205ENST00000487150 ERVK-5Q9HDB9 667 aa16.25■□□□□ 0.19
LIMS3-205ENST00000487150 CXXC1Q9P0U4 656 aaPredicted RBP16.25■□□□□ 0.19
LIMS3-205ENST00000487150 STK17AQ9UEE5 414 aa16.25■□□□□ 0.19
LIMS3-205ENST00000487150 CIZ1Q9ULV3 898 aaPredicted RBP16.25■□□□□ 0.19
LIMS3-205ENST00000487150 PCDHA11Q9Y5I1 949 aa16.25■□□□□ 0.19
LIMS3-205ENST00000487150 DENND3A2RUS2 1198 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 CUTAO60888 179 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 ZSCAN20P17040 1043 aaPredicted RBP16.24■□□□□ 0.19
LIMS3-205ENST00000487150 CDC25AP30304 524 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 DRP2Q13474 957 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 FAM102BQ5T8I3 360 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 CCDC73Q6ZRK6 1079 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 HERC6Q8IVU3 1022 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 RNF149Q8NC42 400 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 RSPH1Q8WYR4 309 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 IFT74Q96LB3 600 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 PPP1R16BQ96T49 567 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 ZBED2Q9BTP6 218 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 SCAND2PQ9GZW5 306 aaPredicted RBP16.24■□□□□ 0.19
LIMS3-205ENST00000487150 POLR3FQ9H1D9 316 aaPredicted RBP16.24■□□□□ 0.19
LIMS3-205ENST00000487150 C2orf40Q9H1Z8 148 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 TSPYL2Q9H2G4 693 aaPredicted RBP16.24■□□□□ 0.19
LIMS3-205ENST00000487150 AGO3Q9H9G7 860 aaKnown RBP16.24■□□□□ 0.19
LIMS3-205ENST00000487150 XPNPEP1Q9NQW7 623 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 CHST12Q9NRB3 414 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 BMP2KQ9NSY1 1161 aaPredicted RBP16.24■□□□□ 0.19
LIMS3-205ENST00000487150 DACT1Q9NYF0 836 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 ST3GAL5Q9UNP4 418 aa16.24■□□□□ 0.19
LIMS3-205ENST00000487150 TRIOBPQ9H2D6 2365 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 A0A087WZ62 844 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 ERLIN2O94905 339 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 STAG3L1P0CL83 205 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 NCLP19338 710 aaKnown RBP16.23■□□□□ 0.19
LIMS3-205ENST00000487150 GUCY2CP25092 1073 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 ARL2P36404 184 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 NAMPTP43490 491 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 ME1P48163 572 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 GRB10Q13322 594 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 ECM1Q16610 540 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 FAM228AQ86W67 206 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 ZBTB8OSQ8IWT0 167 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 MYOCDQ8IZQ8 938 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 SYT2Q8N9I0 419 aaPredicted RBP16.23■□□□□ 0.19
LIMS3-205ENST00000487150 TMEM40Q8WWA1 233 aa16.23■□□□□ 0.19
LIMS3-205ENST00000487150 SYMPKQ92797 1274 aaKnown RBP16.23■□□□□ 0.19
LIMS3-205ENST00000487150 FDXACB1Q9BRP7 624 aaPredicted RBP16.23■□□□□ 0.19
LIMS3-205ENST00000487150 NOC2LQ9Y3T9 749 aaKnown RBP16.23■□□□□ 0.19
LIMS3-205ENST00000487150 LAMA3Q16787 3333 aa16.22■□□□□ 0.19
LIMS3-205ENST00000487150 GJB5O95377 273 aa16.22■□□□□ 0.19
LIMS3-205ENST00000487150 SSBP05455 408 aaKnown RBP eCLIP16.22■□□□□ 0.19
LIMS3-205ENST00000487150 SKIP12755 728 aa16.22■□□□□ 0.19
LIMS3-205ENST00000487150 PLCG1P19174 1290 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms