RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PCDHA11Q9Y5I1 949 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 COL4A6Q14031 1691 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 WDR81Q562E7 1941 aa17.7■□□□□ 0.42
UPF3A-208ENST00000484246 GPR182O15218 404 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 ASAP2O43150 1006 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 RPS6KA5O75582 802 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 GJB5O95377 273 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 AMHP03971 560 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 DNAJB2P25686 324 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 POU5F1BQ06416 359 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 ATL3Q6DD88 541 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 LINC01599Q8WXQ3 324 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 NT5C3AQ9H0P0 336 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 TSPYL2Q9H2G4 693 aaPredicted RBP17.69■□□□□ 0.42
UPF3A-208ENST00000484246 TMX1Q9H3N1 280 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 FBXO2Q9UK22 296 aaPredicted RBP17.69■□□□□ 0.42
UPF3A-208ENST00000484246 GINS2Q9Y248 185 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 NOC2LQ9Y3T9 749 aaKnown RBP17.69■□□□□ 0.42
UPF3A-208ENST00000484246 SRPRBQ9Y5M8 271 aaKnown RBP17.69■□□□□ 0.42
UPF3A-208ENST00000484246 COL4A3BPQ9Y5P4 624 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 TET1Q8NFU7 2136 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 KAT6AQ92794 2004 aa17.69■□□□□ 0.42
UPF3A-208ENST00000484246 YEATS4O95619 227 aa17.68■□□□□ 0.42
UPF3A-208ENST00000484246 EYA4O95677 639 aa17.68■□□□□ 0.42
UPF3A-208ENST00000484246 BRD1O95696 1058 aa17.68■□□□□ 0.42
UPF3A-208ENST00000484246 CYP11B2P19099 503 aa17.68■□□□□ 0.42
UPF3A-208ENST00000484246 ARL2P36404 184 aa17.68■□□□□ 0.42
UPF3A-208ENST00000484246 PKP1Q13835 747 aa17.68■□□□□ 0.42
UPF3A-208ENST00000484246 MXD4Q14582 209 aaPredicted RBP17.68■□□□□ 0.42
UPF3A-208ENST00000484246 SLC39A14Q15043 492 aa17.68■□□□□ 0.42
UPF3A-208ENST00000484246 TMEM119Q4V9L6 283 aa17.68■□□□□ 0.42
UPF3A-208ENST00000484246 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.68■□□□□ 0.42
UPF3A-208ENST00000484246 IFNLR1Q8IU57 520 aaPredicted RBP17.68■□□□□ 0.42
UPF3A-208ENST00000484246 ZNF396Q96N95 335 aaPredicted RBP17.68■□□□□ 0.42
UPF3A-208ENST00000484246 NFKBIZQ9BYH8 718 aa17.68■□□□□ 0.42
UPF3A-208ENST00000484246 GCOM2Q9BZD3 368 aaPredicted RBP17.68■□□□□ 0.42
UPF3A-208ENST00000484246 DDX19AQ9NUU7 478 aaKnown RBP17.68■□□□□ 0.42
UPF3A-208ENST00000484246 ST3GAL5Q9UNP4 418 aa17.68■□□□□ 0.42
UPF3A-208ENST00000484246 KIAA1024Q9UPX6 916 aa17.68■□□□□ 0.42
UPF3A-208ENST00000484246 ARHGEF35A5YM69 484 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 GRXCR1A8MXD5 290 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 CDC25AP30304 524 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 LAMTOR4Q0VGL1 99 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 DSC3Q14574 896 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 RHPN2Q8IUC4 686 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 PRPF31Q8WWY3 499 aaKnown RBP17.67■□□□□ 0.42
UPF3A-208ENST00000484246 NLRP7Q8WX94 980 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 TOP1MTQ969P6 601 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 TMEM143Q96AN5 459 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 TIFAQ96CG3 184 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 PNMA5Q96PV4 448 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 PPP1R16BQ96T49 567 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 INO80BQ9C086 356 aaPredicted RBP17.67■□□□□ 0.42
UPF3A-208ENST00000484246 CCSER1Q9C0I3 900 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 IFT122Q9HBG6 1241 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 MSRAQ9UJ68 235 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 DNM3Q9UQ16 869 aa17.67■□□□□ 0.42
UPF3A-208ENST00000484246 A0A087WZ62 844 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 ENPP3O14638 875 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 USO1O60763 962 aaKnown RBP17.66■□□□□ 0.42
UPF3A-208ENST00000484246 PBX2P40425 430 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 HTRA4P83105 476 aaPredicted RBP17.66■□□□□ 0.42
UPF3A-208ENST00000484246 GRIN1Q05586 938 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 GRB10Q13322 594 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 PCBP1Q15365 356 aaKnown RBP eCLIP17.66■□□□□ 0.42
UPF3A-208ENST00000484246 PADI6Q6TGC4 694 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 SRGAP1Q7Z6B7 1085 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 CABP7Q86V35 215 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 CRIPAKQ8N1N5 446 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 LINC00301Q8NCQ3 95 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 NLRP4Q96MN2 994 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 SCLT1Q96NL6 688 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 FDXACB1Q9BRP7 624 aaPredicted RBP17.66■□□□□ 0.42
UPF3A-208ENST00000484246 BHMT2Q9H2M3 363 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 C1orf112Q9NSG2 853 aa17.66■□□□□ 0.42
UPF3A-208ENST00000484246 YBX2Q9Y2T7 364 aaKnown RBP17.66■□□□□ 0.42
UPF3A-208ENST00000484246 ARID2Q68CP9 1835 aa17.65■□□□□ 0.42
UPF3A-208ENST00000484246 PPP6R2O75170 966 aa17.65■□□□□ 0.42
UPF3A-208ENST00000484246 SFPQP23246 707 aaKnown RBP eCLIP17.65■□□□□ 0.42
UPF3A-208ENST00000484246 UBA7P41226 1012 aa17.65■□□□□ 0.42
UPF3A-208ENST00000484246 NFX1Q12986 1120 aaKnown RBP17.65■□□□□ 0.42
UPF3A-208ENST00000484246 TFDP1Q14186 410 aa17.65■□□□□ 0.42
UPF3A-208ENST00000484246 KCNK18Q7Z418 384 aa17.65■□□□□ 0.42
UPF3A-208ENST00000484246 RTN4RL1Q86UN2 441 aaPredicted RBP17.65■□□□□ 0.42
UPF3A-208ENST00000484246 KSR1Q8IVT5 923 aa17.65■□□□□ 0.42
UPF3A-208ENST00000484246 MYOCDQ8IZQ8 938 aa17.65■□□□□ 0.42
UPF3A-208ENST00000484246 SPRYD3Q8NCJ5 442 aa17.65■□□□□ 0.42
UPF3A-208ENST00000484246 SP7Q8TDD2 431 aaPredicted RBP17.65■□□□□ 0.42
UPF3A-208ENST00000484246 ASAP3Q8TDY4 903 aa17.65■□□□□ 0.42
UPF3A-208ENST00000484246 RAD9AQ99638 391 aa17.65■□□□□ 0.42
UPF3A-208ENST00000484246 TIPINQ9BVW5 301 aa17.65■□□□□ 0.42
UPF3A-208ENST00000484246 POLR3FQ9H1D9 316 aaPredicted RBP17.65■□□□□ 0.42
UPF3A-208ENST00000484246 RC3H2Q9HBD1 1191 aaKnown RBP17.65■□□□□ 0.42
UPF3A-208ENST00000484246 RGS18Q9NS28 235 aa17.65■□□□□ 0.42
UPF3A-208ENST00000484246 BMP2KQ9NSY1 1161 aaPredicted RBP17.65■□□□□ 0.42
UPF3A-208ENST00000484246 A0A087WWV3 80 aa17.64■□□□□ 0.41
UPF3A-208ENST00000484246 MGEA5O60502 916 aa17.64■□□□□ 0.41
UPF3A-208ENST00000484246 GLRA2P23416 452 aa17.64■□□□□ 0.41
UPF3A-208ENST00000484246 PHKA2P46019 1235 aa17.64■□□□□ 0.41
UPF3A-208ENST00000484246 RABGGTBP53611 331 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms