RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 XRCC5P13010 732 aaKnown RBP14.4□□□□□ -0.1
USP40-214ENST00000483519 PON1P27169 355 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 GBP1P32455 592 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 FAM133BQ5BKY9 247 aaKnown RBP14.4□□□□□ -0.1
USP40-214ENST00000483519 DPY19L2P1Q6NXN4 242 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 RBM46Q8TBY0 533 aaKnown RBP14.4□□□□□ -0.1
USP40-214ENST00000483519 SH3RF3Q8TEJ3 882 aaPredicted RBP14.4□□□□□ -0.1
USP40-214ENST00000483519 CARD9Q9H257 536 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 ADAM7Q9H2U9 754 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 EPB41L4BQ9H329 900 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 AZI2Q9H6S1 392 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 TRPC6Q9Y210 931 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 ECM2O94769 699 aaPredicted RBP14.4□□□□□ -0.1
USP40-214ENST00000483519 ANP32DO95626 131 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 BAG3O95817 575 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 GYS1P13807 737 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 ZNF131P52739 623 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 DRG2P55039 364 aaKnown RBP14.4□□□□□ -0.1
USP40-214ENST00000483519 SMIM5Q71RC9 77 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 GPBP1Q86WP2 473 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 DNAAF5Q86Y56 855 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 EYA3Q99504 573 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 PRMT1Q99873 361 aaKnown RBP14.4□□□□□ -0.1
USP40-214ENST00000483519 DDX25Q9UHL0 483 aaKnown RBP14.4□□□□□ -0.1
USP40-214ENST00000483519 CNOT7Q9UIV1 285 aaKnown RBP14.4□□□□□ -0.1
USP40-214ENST00000483519 PLA2G4BP0C869 781 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 ALADP13716 330 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 FERP16591 822 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 TNNI2P48788 182 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 PDE6CP51160 858 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 KLRC3Q07444 240 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 PRPF4BQ13523 1007 aaKnown RBP14.39□□□□□ -0.11
USP40-214ENST00000483519 ERFEQ4G0M1 354 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 TAOK1Q7L7X3 1001 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 GBP7Q8N8V2 638 aaPredicted RBP14.39□□□□□ -0.11
USP40-214ENST00000483519 U2AF1L4Q8WU68 220 aaKnown RBP14.39□□□□□ -0.11
USP40-214ENST00000483519 SRP68Q9UHB9 627 aaKnown RBP14.39□□□□□ -0.11
USP40-214ENST00000483519 TAF1P21675 1872 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 KRT18P05783 430 aaKnown RBP14.39□□□□□ -0.11
USP40-214ENST00000483519 NQO1P15559 274 aaKnown RBP14.39□□□□□ -0.11
USP40-214ENST00000483519 KIAA1755Q5JYT7 1200 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 BTNL9Q6UXG8 535 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 RFFLQ8WZ73 363 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 CELF1Q92879 486 aaKnown RBP14.39□□□□□ -0.11
USP40-214ENST00000483519 THOC1Q96FV9 657 aaKnown RBP14.39□□□□□ -0.11
USP40-214ENST00000483519 NYXQ9GZU5 481 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 ANKRD2Q9GZV1 360 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 RIOX1Q9H6W3 641 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 PARP2Q9UGN5 583 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 PCDHA12Q9UN75 941 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 NCANO14594 1321 aa14.39□□□□□ -0.11
USP40-214ENST00000483519 DDX3XO00571 662 aaKnown RBP eCLIP14.38□□□□□ -0.11
USP40-214ENST00000483519 POLD1P28340 1107 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 GALCP54803 685 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 PLTPP55058 493 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 JAM2P57087 298 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 C3orf67Q6ZVT6 689 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 NEDD1Q8NHV4 660 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 L3MBTL3Q96JM7 780 aaPredicted RBP14.38□□□□□ -0.11
USP40-214ENST00000483519 SPON1Q9HCB6 807 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.38□□□□□ -0.11
USP40-214ENST00000483519 MTRF1LQ9UGC7 380 aaKnown RBP14.38□□□□□ -0.11
USP40-214ENST00000483519 TRAF3IP3Q9Y228 551 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 PITPNM2Q9BZ72 1349 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 SNED1Q8TER0 1413 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 SMIM23A6NLE4 172 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 E9PMD0 336 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 SLC26A4O43511 780 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 EDIL3O43854 480 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 LDHBP07195 334 aaKnown RBP14.38□□□□□ -0.11
USP40-214ENST00000483519 LMNB1P20700 586 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 CCND1P24385 295 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 GSTO1P78417 241 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 MAPK7Q13164 816 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 SLC29A2Q14542 456 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 DCAF17Q5H9S7 520 aaPredicted RBP14.38□□□□□ -0.11
USP40-214ENST00000483519 JAMLQ86YT9 394 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 KIRREL3Q8IZU9 778 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 AGAP11Q8TF27 550 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 TGFBRAP1Q8WUH2 860 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 RNF25Q96BH1 459 aaPredicted RBP14.38□□□□□ -0.11
USP40-214ENST00000483519 TMEM109Q9BVC6 243 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 METTL14Q9HCE5 456 aaKnown RBP14.38□□□□□ -0.11
USP40-214ENST00000483519 KIAA1024Q9UPX6 916 aa14.38□□□□□ -0.11
USP40-214ENST00000483519 DDX3YO15523 660 aaKnown RBP14.37□□□□□ -0.11
USP40-214ENST00000483519 CALUO43852 315 aaPredicted RBP14.37□□□□□ -0.11
USP40-214ENST00000483519 TMEM253P0C7T8 217 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 EPHA7Q15375 998 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 KCTD19Q17RG1 926 aaPredicted RBP14.37□□□□□ -0.11
USP40-214ENST00000483519 PPP1R18Q6NYC8 613 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 CTNNBL1Q8WYA6 563 aaPredicted RBP14.37□□□□□ -0.11
USP40-214ENST00000483519 HAS1Q92839 578 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 MXD3Q9BW11 206 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 UBA5Q9GZZ9 404 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 ZHX3Q9H4I2 956 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 SLC24A3Q9HC58 644 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 KCNMB3Q9NPA1 279 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 ABCF3Q9NUQ8 709 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 SNX3O60493 162 aa14.37□□□□□ -0.11
USP40-214ENST00000483519 CYP11B2P19099 503 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms