RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 FAM160B1Q5W0V3 765 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 WWC2Q6AWC2 1192 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 CYFIP1Q7L576 1253 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 DHX32Q7L7V1 743 aaKnown RBP4.72□□□□□ -1.65
VPS13D-208ENST00000481484 SMAP1Q8IYB5 467 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-208ENST00000481484 MYOCDQ8IZQ8 938 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 REXO1Q8N1G1 1221 aaKnown RBP4.72□□□□□ -1.65
VPS13D-208ENST00000481484 MICALL1Q8N3F8 863 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 FBXL16Q8N461 479 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 SRBD1Q8N5C6 995 aaKnown RBP4.72□□□□□ -1.65
VPS13D-208ENST00000481484 GDPD5Q8WTR4 605 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 ARNTL2Q8WYA1 636 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 SEPT1Q8WYJ6 367 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 TBC1D5Q92609 795 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 GLG1Q92896 1179 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 MRPL38Q96DV4 380 aaKnown RBP4.72□□□□□ -1.65
VPS13D-208ENST00000481484 FAM167AQ96KS9 214 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 NEK1Q96PY6 1258 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 YME1L1Q96TA2 773 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 MYL10Q9BUA6 226 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 PLVAPQ9BX97 442 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 C1QTNF1Q9BXJ1 281 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 ANO3Q9BYT9 981 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 C22orf23Q9BZE7 217 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 RIC8AQ9NPQ8 531 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 JADE2Q9NQC1 790 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 BARHL2Q9NY43 387 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 SLC9A2Q9UBY0 812 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 UBIAD1Q9Y5Z9 338 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 PLXNA4Q9HCM2 1894 aa4.72□□□□□ -1.65
VPS13D-208ENST00000481484 FIGNL2A6NMB9 653 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 STXBP3O00186 592 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 TREHO43280 583 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 LPXNO60711 386 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 CTSHP09668 335 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 STAG3L1P0CL83 205 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 MYOGP15173 224 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 ITGB5P18084 799 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 PSMA5P28066 241 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 GNA11P29992 359 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 METAP2P50579 478 aaKnown RBP eCLIP4.71□□□□□ -1.66
VPS13D-208ENST00000481484 MRPS6P82932 125 aaKnown RBP4.71□□□□□ -1.66
VPS13D-208ENST00000481484 RELBQ01201 579 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 KRT76Q01546 638 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 AKAP17AQ02040 695 aaKnown RBP4.71□□□□□ -1.66
VPS13D-208ENST00000481484 SP2Q02086 613 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 PTSQ03393 145 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 COL19A1Q14993 1142 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 PFKFB3Q16875 520 aaPredicted RBP4.71□□□□□ -1.66
VPS13D-208ENST00000481484 USP17L6PQ6QN14 398 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 BLOC1S2Q6QNY1 142 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 PLPPR4Q7Z2D5 763 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 TRIM50Q86XT4 487 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 NPAS4Q8IUM7 802 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 CMTR2Q8IYT2 770 aaKnown RBP4.71□□□□□ -1.66
VPS13D-208ENST00000481484 NME8Q8N427 588 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 DBF4BQ8NFT6 615 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 P2RX5Q93086 422 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 WNT8BQ93098 351 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 TOP1MTQ969P6 601 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 INSM2Q96T92 566 aaPredicted RBP4.71□□□□□ -1.66
VPS13D-208ENST00000481484 POP1Q99575 1024 aaKnown RBP4.71□□□□□ -1.66
VPS13D-208ENST00000481484 MXRA8Q9BRK3 442 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 RNPEPQ9H4A4 650 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 NSUN3Q9H649 340 aaKnown RBP4.71□□□□□ -1.66
VPS13D-208ENST00000481484 UBE2ZQ9H832 354 aaPredicted RBP4.71□□□□□ -1.66
VPS13D-208ENST00000481484 ZNF395Q9H8N7 513 aaPredicted RBP4.71□□□□□ -1.66
VPS13D-208ENST00000481484 RC3H2Q9HBD1 1191 aaKnown RBP4.71□□□□□ -1.66
VPS13D-208ENST00000481484 PRM3Q9NNZ6 103 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 C1orf112Q9NSG2 853 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 PRKAG3Q9UGI9 489 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 CEP131Q9UPN4 1083 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 HCN4Q9Y3Q4 1203 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 PCDHA2Q9Y5H9 948 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 TRPV2Q9Y5S1 764 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 TAF6LQ9Y6J9 622 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 DENND4AQ7Z401 1863 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 IGSF9BQ9UPX0 1349 aa4.71□□□□□ -1.66
VPS13D-208ENST00000481484 RIF1Q5UIP0 2472 aaKnown RBP4.7□□□□□ -1.66
VPS13D-208ENST00000481484 FAM186AA6NE01 2351 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 KLF18A0A0U1RQI7 1052 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 SMIM35A0A1B0GVV1 85 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 LCHNA4D1U4 455 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 SLC35F4A4IF30 521 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 EPOPA6NHQ4 379 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 WDR64B1ANS9 1081 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 H3BNC9 293 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 MEIS1O00470 390 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 HBP1O60381 514 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 MMP1P03956 469 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 CYP3A4P08684 503 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 SRGAP2BP0DMP2 458 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 GHRP10912 638 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 SCG2P13521 617 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 LORP23490 312 aaPredicted RBP4.7□□□□□ -1.66
VPS13D-208ENST00000481484 CTNNB1P35222 781 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 JAK3P52333 1124 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 ACTR2P61160 394 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 SP4Q02446 784 aa4.7□□□□□ -1.66
VPS13D-208ENST00000481484 MGAT3Q09327 533 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms