RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 SGMS1Q86VZ5 419 aa13.59□□□□□ -0.23
HDAC6-219ENST00000476625 RASEFQ8IZ41 740 aa13.59□□□□□ -0.23
HDAC6-219ENST00000476625 SLC39A11Q8N1S5 342 aa13.59□□□□□ -0.23
HDAC6-219ENST00000476625 CRYGNQ8WXF5 182 aa13.59□□□□□ -0.23
HDAC6-219ENST00000476625 LPPQ93052 612 aa13.59□□□□□ -0.23
HDAC6-219ENST00000476625 ZNF558Q96NG5 402 aa13.59□□□□□ -0.23
HDAC6-219ENST00000476625 CDCA3Q99618 268 aaPredicted RBP13.59□□□□□ -0.23
HDAC6-219ENST00000476625 ZNF577Q9BSK1 485 aa13.59□□□□□ -0.23
HDAC6-219ENST00000476625 MTA3Q9BTC8 594 aa13.59□□□□□ -0.23
HDAC6-219ENST00000476625 ADAMTS10Q9H324 1103 aa13.59□□□□□ -0.23
HDAC6-219ENST00000476625 KLF18A0A0U1RQI7 1052 aa13.58□□□□□ -0.24
HDAC6-219ENST00000476625 ZBTB43O43298 467 aa13.58□□□□□ -0.24
HDAC6-219ENST00000476625 SLC26A2P50443 739 aa13.58□□□□□ -0.24
HDAC6-219ENST00000476625 PPP1R18Q6NYC8 613 aa13.58□□□□□ -0.24
HDAC6-219ENST00000476625 LRRC43Q8N309 656 aa13.58□□□□□ -0.24
HDAC6-219ENST00000476625 TMTC2Q8N394 836 aa13.58□□□□□ -0.24
HDAC6-219ENST00000476625 BBXQ8WY36 941 aaPredicted RBP13.58□□□□□ -0.24
HDAC6-219ENST00000476625 ELAC1Q9H777 363 aaKnown RBP13.58□□□□□ -0.24
HDAC6-219ENST00000476625 BARHL2Q9NY43 387 aa13.58□□□□□ -0.24
HDAC6-219ENST00000476625 NAP1L2Q9ULW6 460 aaPredicted RBP13.58□□□□□ -0.24
HDAC6-219ENST00000476625 LZTS1Q9Y250 596 aa13.58□□□□□ -0.24
HDAC6-219ENST00000476625 MAFBQ9Y5Q3 323 aaPredicted RBP13.58□□□□□ -0.24
HDAC6-219ENST00000476625 COL4A3Q01955 1670 aa13.58□□□□□ -0.24
HDAC6-219ENST00000476625 GALR2O43603 387 aaPredicted RBP13.57□□□□□ -0.24
HDAC6-219ENST00000476625 CHMP2AO43633 222 aa13.57□□□□□ -0.24
HDAC6-219ENST00000476625 MYBP10242 640 aa13.57□□□□□ -0.24
HDAC6-219ENST00000476625 ADD1P35611 737 aaKnown RBP13.57□□□□□ -0.24
HDAC6-219ENST00000476625 GPC3P51654 580 aa13.57□□□□□ -0.24
HDAC6-219ENST00000476625 BCAR1P56945 870 aa13.57□□□□□ -0.24
HDAC6-219ENST00000476625 EXOSC10Q01780 885 aaKnown RBP13.57□□□□□ -0.24
HDAC6-219ENST00000476625 PRR16Q569H4 304 aa13.57□□□□□ -0.24
HDAC6-219ENST00000476625 ZNF598Q86UK7 904 aaKnown RBP13.57□□□□□ -0.24
HDAC6-219ENST00000476625 TNPO1Q92973 898 aaKnown RBP13.57□□□□□ -0.24
HDAC6-219ENST00000476625 LENG9Q96B70 501 aa13.57□□□□□ -0.24
HDAC6-219ENST00000476625 VN1R3Q9BXE9 311 aa13.57□□□□□ -0.24
HDAC6-219ENST00000476625 SPG21Q9NZD8 308 aa13.57□□□□□ -0.24
HDAC6-219ENST00000476625 LIMD1Q9UGP4 676 aa13.57□□□□□ -0.24
HDAC6-219ENST00000476625 SORCS3Q9UPU3 1222 aa13.57□□□□□ -0.24
HDAC6-219ENST00000476625 DMDP11532 3685 aa13.56□□□□□ -0.24
HDAC6-219ENST00000476625 ZDBF2Q9HCK1 2354 aa13.56□□□□□ -0.24
HDAC6-219ENST00000476625 FOSP01100 380 aaPredicted RBP13.56□□□□□ -0.24
HDAC6-219ENST00000476625 PRKCEQ02156 737 aa13.56□□□□□ -0.24
HDAC6-219ENST00000476625 AP3B2Q13367 1082 aa13.56□□□□□ -0.24
HDAC6-219ENST00000476625 MTMR3Q13615 1198 aa13.56□□□□□ -0.24
HDAC6-219ENST00000476625 SMC1AQ14683 1233 aaKnown RBP13.56□□□□□ -0.24
HDAC6-219ENST00000476625 CWF19L1Q69YN2 538 aaKnown RBP13.56□□□□□ -0.24
HDAC6-219ENST00000476625 PDE12Q6L8Q7 609 aaKnown RBP13.56□□□□□ -0.24
HDAC6-219ENST00000476625 NIPA1Q7RTP0 329 aa13.56□□□□□ -0.24
HDAC6-219ENST00000476625 FRMD5Q7Z6J6 570 aa13.56□□□□□ -0.24
HDAC6-219ENST00000476625 ABI1Q8IZP0 508 aa13.56□□□□□ -0.24
HDAC6-219ENST00000476625 MRPL43Q8N983 215 aaKnown RBP13.56□□□□□ -0.24
HDAC6-219ENST00000476625 CASP10Q92851 521 aa13.56□□□□□ -0.24
HDAC6-219ENST00000476625 PRRX2Q99811 253 aa13.56□□□□□ -0.24
HDAC6-219ENST00000476625 ADAM7Q9H2U9 754 aa13.56□□□□□ -0.24
HDAC6-219ENST00000476625 NGRNQ9NPE2 291 aaKnown RBP13.56□□□□□ -0.24
HDAC6-219ENST00000476625 RBM28Q9NW13 759 aaKnown RBP13.56□□□□□ -0.24
HDAC6-219ENST00000476625 SAMM50Q9Y512 469 aa13.56□□□□□ -0.24
HDAC6-219ENST00000476625 CFAP54Q96N23 3096 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 ARID2Q68CP9 1835 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.55□□□□□ -0.24
HDAC6-219ENST00000476625 PRR23AA6NEV1 266 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 PI15O43692 258 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 ZC3H11AO75152 810 aaKnown RBP eCLIP13.55□□□□□ -0.24
HDAC6-219ENST00000476625 CXCL14O95715 111 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 OATP04181 439 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 PSAPP07602 524 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 CYP3A4P08684 503 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 SRGAP2BP0DMP2 458 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 EIF4BP23588 611 aaKnown RBP13.55□□□□□ -0.24
HDAC6-219ENST00000476625 PKN1Q16512 942 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 TMC5Q6UXY8 1006 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 SYNE3Q6ZMZ3 975 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 KSR1Q8IVT5 923 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 PHKBQ93100 1093 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 ZBP1Q9H171 429 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 DNAJB4Q9UDY4 337 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 PUF60Q9UHX1 559 aaKnown RBP13.55□□□□□ -0.24
HDAC6-219ENST00000476625 INPP5FQ9Y2H2 1132 aa13.55□□□□□ -0.24
HDAC6-219ENST00000476625 SSBP05455 408 aaKnown RBP eCLIP13.54□□□□□ -0.24
HDAC6-219ENST00000476625 DARSP14868 501 aaKnown RBP13.54□□□□□ -0.24
HDAC6-219ENST00000476625 ZSCAN20P17040 1043 aaPredicted RBP13.54□□□□□ -0.24
HDAC6-219ENST00000476625 AFF1P51825 1210 aaKnown RBP13.54□□□□□ -0.24
HDAC6-219ENST00000476625 KRT17Q04695 432 aa13.54□□□□□ -0.24
HDAC6-219ENST00000476625 PFKFB3Q16875 520 aaPredicted RBP13.54□□□□□ -0.24
HDAC6-219ENST00000476625 ZNF746Q6NUN9 644 aaPredicted RBP13.54□□□□□ -0.24
HDAC6-219ENST00000476625 VPS52Q8N1B4 723 aa13.54□□□□□ -0.24
HDAC6-219ENST00000476625 ST13P5Q8NFI4 369 aaPredicted RBP13.54□□□□□ -0.24
HDAC6-219ENST00000476625 SLC22A17Q8WUG5 538 aa13.54□□□□□ -0.24
HDAC6-219ENST00000476625 SCLT1Q96NL6 688 aa13.54□□□□□ -0.24
HDAC6-219ENST00000476625 MAP7D2Q96T17 732 aa13.54□□□□□ -0.24
HDAC6-219ENST00000476625 GBP3Q9H0R5 595 aa13.54□□□□□ -0.24
HDAC6-219ENST00000476625 UNC45AQ9H3U1 944 aa13.54□□□□□ -0.24
HDAC6-219ENST00000476625 NRDE2Q9H7Z3 1164 aa13.54□□□□□ -0.24
HDAC6-219ENST00000476625 DBR1Q9UK59 544 aaKnown RBP13.54□□□□□ -0.24
HDAC6-219ENST00000476625 NR2E1Q9Y466 385 aa13.54□□□□□ -0.24
HDAC6-219ENST00000476625 PCDHA10Q9Y5I2 948 aa13.54□□□□□ -0.24
HDAC6-219ENST00000476625 MSH4O15457 936 aa13.53□□□□□ -0.24
HDAC6-219ENST00000476625 NARSO43776 548 aaKnown RBP13.53□□□□□ -0.24
HDAC6-219ENST00000476625 DTNBO60941 627 aa13.53□□□□□ -0.24
HDAC6-219ENST00000476625 HOXB8P17481 243 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms