RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 SAMM50Q9Y512 469 aa13.83□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 PCDHB12Q9Y5F1 795 aa13.83□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 PCDHGC5Q9Y5F6 944 aa13.83□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CYP46A1Q9Y6A2 500 aa13.83□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TBKBP1A7MCY6 615 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 FGF18O76093 207 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TDP2O95551 362 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 FGFR1P11362 822 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 DARSP14868 501 aaKnown RBP13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TMOD1P28289 359 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 SSTR3P32745 418 aaPredicted RBP13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 ERVFC1P60507 584 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 PLCB3Q01970 1234 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 DRP2Q13474 957 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 LRCH2Q5VUJ6 765 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 EP400NLQ6ZTU2 488 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 ZNF598Q86UK7 904 aaKnown RBP13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TRIM22Q8IYM9 498 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 LRRC71Q8N4P6 559 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 COLGALT1Q8NBJ5 622 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 AIFM3Q96NN9 605 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 LARP6Q9BRS8 491 aaKnown RBP13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TEKT3Q9BXF9 490 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TMEM117Q9H0C3 514 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 ATP6V0A4Q9HBG4 840 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 LZTS1Q9Y250 596 aa13.82□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 A0A0U1RQF3 1178 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 DCXO43602 365 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 ATF7P17544 494 aaPredicted RBP13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 NRIP1P48552 1158 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CLUL1Q15846 466 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CSPP1Q1MSJ5 1256 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 XKR3Q5GH77 459 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 PDE12Q6L8Q7 609 aaKnown RBP13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TMEM184AQ6ZMB5 413 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 ECHDC2Q86YB7 292 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 VN1R2Q8NFZ6 395 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 PPP2R3CQ969Q6 453 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 MAP7D2Q96T17 732 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TRAIPQ9BWF2 469 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TLR9Q9NR96 1032 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 AAASQ9NRG9 546 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TCEAL9Q9UHQ7 104 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 AKT3Q9Y243 479 aa13.81□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 EOMESO95936 686 aa13.8□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CDC42EP1Q00587 391 aa13.8□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TBC1D8BQ0IIM8 1120 aa13.8□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CBX2Q14781 532 aaPredicted RBP13.8□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 HERC4Q5GLZ8 1057 aaPredicted RBP13.8□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CLLU1OSQ5K130 101 aa13.8□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 SUSD6Q92537 303 aa13.8□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 FAM122AQ96E09 287 aa13.8□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 POP1Q99575 1024 aaKnown RBP13.8□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 PHF20Q9BVI0 1012 aa13.8□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 UPF3BQ9BZI7 483 aaKnown RBP13.8□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 KCNMB3Q9NPA1 279 aa13.8□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TMEM150BA6NC51 233 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 LOC730098B7Z3J9 87 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 EML1O00423 815 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 HOXA2O43364 376 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CHMP2AO43633 222 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 SLC37A4O43826 429 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 MAFO75444 373 aaPredicted RBP13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CENPBP07199 599 aaPredicted RBP13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 ZSCAN20P17040 1043 aaPredicted RBP13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 LAG3P18627 525 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 HOXD11P31277 338 aaPredicted RBP13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 NDUFV1P49821 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 SCRN1Q12765 414 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 PPP2R5CQ13362 524 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 DUSP6Q16828 381 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 PPP4R3AQ6IN85 833 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 KCNT2Q6UVM3 1135 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 ANO5Q75V66 913 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 MIER3Q7Z3K6 550 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 RBM23Q86U06 439 aaKnown RBP13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 MRPS27Q92552 414 aaKnown RBP13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 ZNF668Q96K58 619 aaPredicted RBP13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CDCA3Q99618 268 aaPredicted RBP13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 S1PR5Q9H228 398 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 TLE6Q9H808 572 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CHST12Q9NRB3 414 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 PDRG1Q9NUG6 133 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 VAV3Q9UKW4 847 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 HCN4Q9Y3Q4 1203 aa13.79□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 MYO10Q9HD67 2058 aa13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CPLX1O14810 134 aa13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 PER2O15055 1255 aa13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 PFKFB2O60825 505 aa13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CSDE1O75534 798 aaKnown RBP13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CSPG5O95196 566 aa13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 CTDNEP1O95476 244 aa13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 RBM10P98175 930 aaKnown RBP13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 NONOQ15233 471 aaKnown RBP eCLIP13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 INF2Q27J81 1249 aa13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 KRT25Q7Z3Z0 450 aa13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 RNF135Q8IUD6 432 aa13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 HAS1Q92839 578 aa13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 FAM20AQ96MK3 541 aa13.78□□□□□ -0.2
MSH5-SAPCD1-205ENST00000476085 DDX25Q9UHL0 483 aaKnown RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms