RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 METAP2P50579 478 aaKnown RBP eCLIP5.62□□□□□ -1.51
USP4-209ENST00000475873 MRPL12P52815 198 aaKnown RBP5.62□□□□□ -1.51
USP4-209ENST00000475873 SATB1Q01826 763 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 SRSF1Q07955 248 aaKnown RBP eCLIP5.62□□□□□ -1.51
USP4-209ENST00000475873 ZNF543Q08ER8 600 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 PPFIA1Q13136 1202 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 DSC3Q14574 896 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 NONOQ15233 471 aaKnown RBP eCLIP5.62□□□□□ -1.51
USP4-209ENST00000475873 PLA2G2CQ5R387 149 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 ZBTB41Q5SVQ8 909 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 UTP14CQ5TAP6 766 aaKnown RBP5.62□□□□□ -1.51
USP4-209ENST00000475873 SH3PXD2AQ5TCZ1 1133 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 ARHGEF16Q5VV41 709 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 GIMAP6Q6P9H5 292 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 SLC24A5Q71RS6 500 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 CYFIP1Q7L576 1253 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.62□□□□□ -1.51
USP4-209ENST00000475873 VSIG10LQ86VR7 867 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 CMASQ8NFW8 434 aaPredicted RBP5.62□□□□□ -1.51
USP4-209ENST00000475873 TRAPPC12Q8WVT3 735 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 DDRGK1Q96HY6 314 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 SHDQ96IW2 340 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 TMEM117Q9H0C3 514 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 ARRDC1-AS1Q9H2J1 176 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 CHRDQ9H2X0 955 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 BOLA2Q9H3K6 86 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 MLXIPQ9HAP2 919 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 RGS18Q9NS28 235 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 TMEM161AQ9NX61 479 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 EXOC6BQ9Y2D4 811 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 MSRB2Q9Y3D2 182 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 NOC2LQ9Y3T9 749 aaKnown RBP5.62□□□□□ -1.51
USP4-209ENST00000475873 TRPV2Q9Y5S1 764 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 CCDC171Q6TFL3 1326 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 UBR5O95071 2799 aaPredicted RBP5.62□□□□□ -1.51
USP4-209ENST00000475873 COL4A2P08572 1712 aa5.62□□□□□ -1.51
USP4-209ENST00000475873 CCDC195A0A1B0GUA6 201 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 COL6A6A6NMZ7 2263 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 K7ESF4 209 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 AXIN1O15169 862 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 SNHG28P0DPA3 235 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 TRIM27P14373 513 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 MARK3P27448 753 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 HSD17B4P51659 736 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 BCAR1P56945 870 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 MRPS9P82933 396 aaKnown RBP5.61□□□□□ -1.51
USP4-209ENST00000475873 SP4Q02446 784 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 GHRHRQ02643 423 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 KRT17Q04695 432 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 PRKCQQ04759 706 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 EML5Q05BV3 1969 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 NFX1Q12986 1120 aaKnown RBP5.61□□□□□ -1.51
USP4-209ENST00000475873 ATMQ13315 3056 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 PGM5Q15124 567 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 WDR44Q5JSH3 913 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 METTL7BQ6UX53 244 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 MAMSTRQ6ZN01 415 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 TPRG1Q6ZUI0 275 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 GET4Q7L5D6 327 aaPredicted RBP5.61□□□□□ -1.51
USP4-209ENST00000475873 LRRC43Q8N309 656 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 KLHL5Q96PQ7 755 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 TMEM47Q9BQJ4 181 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 RHOBTB2Q9BYZ6 727 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 CELF4Q9BZC1 486 aaKnown RBP5.61□□□□□ -1.51
USP4-209ENST00000475873 RNF39Q9H2S5 420 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 MAN1C1Q9NR34 630 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 DOPEY2Q9Y3R5 2298 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 KDM3AQ9Y4C1 1321 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 NEUROG3Q9Y4Z2 214 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 RAI2Q9Y5P3 530 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 MGAQ8IWI9 3026 aa5.61□□□□□ -1.51
USP4-209ENST00000475873 MYH6P13533 1939 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 PLXNB3Q9ULL4 1909 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 NBPF19A0A087WUL8 3843 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 C4orf47A7E2U8 309 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 M0R2C6 588 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 NOP56O00567 594 aaKnown RBP5.6□□□□□ -1.51
USP4-209ENST00000475873 NRG2O14511 850 aaPredicted RBP5.6□□□□□ -1.51
USP4-209ENST00000475873 INPPL1O15357 1258 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 GPAA1O43292 621 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 FOXD2O60548 495 aaPredicted RBP5.6□□□□□ -1.51
USP4-209ENST00000475873 PPP1R11O60927 126 aaPredicted RBP5.6□□□□□ -1.51
USP4-209ENST00000475873 KRT38O76015 456 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 GOLGA8HP0CJ92 632 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 TGFB3P10600 412 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 HOXA13P31271 388 aaPredicted RBP5.6□□□□□ -1.51
USP4-209ENST00000475873 IGBP1P78318 339 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 ADCY1Q08828 1119 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 SLFN5Q08AF3 891 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 C19orf57Q0VDD7 668 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 CDC37Q16543 378 aaPredicted RBP5.6□□□□□ -1.51
USP4-209ENST00000475873 RNF43Q68DV7 783 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 RSPO2Q6UXX9 243 aaPredicted RBP5.6□□□□□ -1.51
USP4-209ENST00000475873 STOX1Q6ZVD7 989 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 RSPH3Q86UC2 560 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 FAM228AQ86W67 206 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 IFNL3Q8IZI9 196 aa5.6□□□□□ -1.51
USP4-209ENST00000475873 C12orf50Q8NA57 414 aaPredicted RBP5.6□□□□□ -1.51
USP4-209ENST00000475873 HNRNPLLQ8WVV9 542 aaKnown RBP5.6□□□□□ -1.51
USP4-209ENST00000475873 PIK3R5Q8WYR1 880 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms