RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 STK24Q9Y6E0 443 aa15.86■□□□□ 0.13
VAMP4-203ENST00000474047 PTPRSQ13332 1948 aa15.86■□□□□ 0.13
VAMP4-203ENST00000474047 GAS2O43903 313 aaKnown RBP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 XRCC6P12956 609 aaKnown RBP eCLIP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 IGFBP4P22692 258 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 CCT6AP40227 531 aaKnown RBP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 FXR2P51116 673 aaKnown RBP eCLIP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 PDIA5Q14554 519 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 EMC2Q15006 297 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 BRAPQ7Z569 592 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 CATSPER3Q86XQ3 398 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 C4orf32Q8N8J7 132 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 PSPC1Q8WXF1 523 aaKnown RBP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 SNX21Q969T3 373 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 NLRP4Q96MN2 994 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 NACC1Q96RE7 527 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 MTRQ99707 1265 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 ADAM2Q99965 735 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 POLR3CQ9BUI4 534 aaPredicted RBP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 INO80BQ9C086 356 aaPredicted RBP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 TSPYL2Q9H2G4 693 aaPredicted RBP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 DHX33Q9H6R0 707 aaKnown RBP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 LAMA2P24043 3122 aaKnown RBP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 A0A087WWV3 80 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 A0A087WZ62 844 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 DARSP14868 501 aaKnown RBP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 RTN4RL1Q86UN2 441 aaPredicted RBP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 FERMT3Q86UX7 667 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 ZNF410Q86VK4 478 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 FAM228AQ86W67 206 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 FDXACB1Q9BRP7 624 aaPredicted RBP15.85■□□□□ 0.13
VAMP4-203ENST00000474047 ATP6V0A4Q9HBG4 840 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 C1orf112Q9NSG2 853 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 MTUS1Q9ULD2 1270 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 PCDHB7Q9Y5E2 793 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 COL4A3BPQ9Y5P4 624 aa15.85■□□□□ 0.13
VAMP4-203ENST00000474047 MED24O75448 989 aa15.84■□□□□ 0.13
VAMP4-203ENST00000474047 DGAT1O75907 488 aa15.84■□□□□ 0.13
VAMP4-203ENST00000474047 SRGAP2CP0DJJ0 459 aa15.84■□□□□ 0.13
VAMP4-203ENST00000474047 SPATA31C1P0DKV0 1188 aa15.84■□□□□ 0.13
VAMP4-203ENST00000474047 RPA1P27694 616 aa15.84■□□□□ 0.13
VAMP4-203ENST00000474047 PRPHP41219 470 aa15.84■□□□□ 0.13
VAMP4-203ENST00000474047 HTRA4P83105 476 aaPredicted RBP15.84■□□□□ 0.13
VAMP4-203ENST00000474047 NPAS4Q8IUM7 802 aa15.84■□□□□ 0.13
VAMP4-203ENST00000474047 KSR1Q8IVT5 923 aa15.84■□□□□ 0.13
VAMP4-203ENST00000474047 PRPF31Q8WWY3 499 aaKnown RBP15.84■□□□□ 0.13
VAMP4-203ENST00000474047 TGS1Q96RS0 853 aaKnown RBP15.84■□□□□ 0.13
VAMP4-203ENST00000474047 TMX1Q9H3N1 280 aa15.84■□□□□ 0.13
VAMP4-203ENST00000474047 ASAP2O43150 1006 aa15.83■□□□□ 0.13
VAMP4-203ENST00000474047 SYT1P21579 422 aa15.83■□□□□ 0.13
VAMP4-203ENST00000474047 SFPQP23246 707 aaKnown RBP eCLIP15.83■□□□□ 0.13
VAMP4-203ENST00000474047 KRT79Q5XKE5 535 aa15.83■□□□□ 0.13
VAMP4-203ENST00000474047 SLC24A5Q71RS6 500 aa15.83■□□□□ 0.13
VAMP4-203ENST00000474047 SNX29Q8TEQ0 813 aa15.83■□□□□ 0.13
VAMP4-203ENST00000474047 RGS18Q9NS28 235 aa15.83■□□□□ 0.13
VAMP4-203ENST00000474047 LINC01553A4QN01 128 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 ARHGEF35A5YM69 484 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 GTPBP6O43824 516 aaPredicted RBP15.82■□□□□ 0.12
VAMP4-203ENST00000474047 USO1O60763 962 aaKnown RBP15.82■□□□□ 0.12
VAMP4-203ENST00000474047 CSDE1O75534 798 aaKnown RBP15.82■□□□□ 0.12
VAMP4-203ENST00000474047 ARHGEF15O94989 841 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 FGFR4P22455 802 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 SARSP49591 514 aaKnown RBP15.82■□□□□ 0.12
VAMP4-203ENST00000474047 RARRES1P49788 294 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 LAMTOR4Q0VGL1 99 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 TFDP1Q14186 410 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 MXD4Q14582 209 aaPredicted RBP15.82■□□□□ 0.12
VAMP4-203ENST00000474047 POTEGQ6S5H5 508 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 FIBCD1Q8N539 461 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 MAFAQ8NHW3 353 aaPredicted RBP15.82■□□□□ 0.12
VAMP4-203ENST00000474047 LINC01599Q8WXQ3 324 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 DBR1Q9UK59 544 aaKnown RBP15.82■□□□□ 0.12
VAMP4-203ENST00000474047 SZT2Q5T011 3432 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 MGEA5O60502 916 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 BMP15O95972 392 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 MUTP22033 750 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 ATP2C1P98194 919 aaPredicted RBP15.82■□□□□ 0.12
VAMP4-203ENST00000474047 BTG3Q14201 252 aaPredicted RBP15.82■□□□□ 0.12
VAMP4-203ENST00000474047 ZRSR1Q15695 479 aaKnown RBP15.82■□□□□ 0.12
VAMP4-203ENST00000474047 MAEAQ7L5Y9 396 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 CATSPER4Q7RTX7 472 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 IGSF22Q8N9C0 903 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 KIAA1024Q9UPX6 916 aa15.82■□□□□ 0.12
VAMP4-203ENST00000474047 TTC3P53804 2025 aa15.81■□□□□ 0.12
VAMP4-203ENST00000474047 VWA3AA6NCI4 1184 aa15.81■□□□□ 0.12
VAMP4-203ENST00000474047 RFXAPO00287 272 aa15.81■□□□□ 0.12
VAMP4-203ENST00000474047 ERVK-21P61565 698 aa15.81■□□□□ 0.12
VAMP4-203ENST00000474047 ARL6IP4Q66PJ3 421 aaKnown RBP15.81■□□□□ 0.12
VAMP4-203ENST00000474047 MICALL1Q8N3F8 863 aa15.81■□□□□ 0.12
VAMP4-203ENST00000474047 RNF149Q8NC42 400 aa15.81■□□□□ 0.12
VAMP4-203ENST00000474047 PPM1EQ8WY54 764 aa15.81■□□□□ 0.12
VAMP4-203ENST00000474047 DDX19AQ9NUU7 478 aaKnown RBP15.81■□□□□ 0.12
VAMP4-203ENST00000474047 DACT1Q9NYF0 836 aa15.81■□□□□ 0.12
VAMP4-203ENST00000474047 DGKIO75912 1065 aa15.8■□□□□ 0.12
VAMP4-203ENST00000474047 PHKA2P46019 1235 aa15.8■□□□□ 0.12
VAMP4-203ENST00000474047 PAN2Q504Q3 1202 aaKnown RBP15.8■□□□□ 0.12
VAMP4-203ENST00000474047 PADI6Q6TGC4 694 aa15.8■□□□□ 0.12
VAMP4-203ENST00000474047 SRGAP1Q7Z6B7 1085 aa15.8■□□□□ 0.12
VAMP4-203ENST00000474047 RNF169Q8NCN4 708 aa15.8■□□□□ 0.12
VAMP4-203ENST00000474047 MCPH1Q8NEM0 835 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms