RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 FAM205CA6NFA0 338 aa17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 GCFC2P16383 781 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 HOXD11P31277 338 aaPredicted RBP17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 KRT2P35908 639 aa17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 NR5A1Q13285 461 aa17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 CAMK1Q14012 370 aa17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 XKR3Q5GH77 459 aa17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 EARS2Q5JPH6 523 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 CRIPAKQ8N1N5 446 aa17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 NSUN7Q8NE18 718 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 BRMS1Q9HCU9 246 aa17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 RGS18Q9NS28 235 aa17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 PLAGL2Q9UPG8 496 aa17.67■□□□□ 0.42
CCDC88B-205ENST00000472524 PRR33A8MZF0 331 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 EML1O00423 815 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 NCK2O43639 380 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 MARCH6O60337 910 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 JAK2O60674 1132 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 MMP1P03956 469 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 ALADP13716 330 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 TARBP2Q15633 366 aaKnown RBP17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 PPP4R3AQ6IN85 833 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 POTEDQ86YR6 584 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 FAM20AQ96MK3 541 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 PLVAPQ9BX97 442 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 ADAMTS10Q9H324 1103 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 IGFLR1Q9H665 355 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 KCNMB3Q9NPA1 279 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 C1orf112Q9NSG2 853 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 VAV3Q9UKW4 847 aa17.66■□□□□ 0.42
CCDC88B-205ENST00000472524 C19orf67A6NJJ6 358 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 DDX11L8A8MPP1 907 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 C9IYK1 514 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 LINC01565O15544 149 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 TBX10O75333 385 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 STBD1O95210 358 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 DNAJB1P25685 340 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 GPC3P51654 580 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 PPP2R5CQ13362 524 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 DRP2Q13474 957 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 PLA2G4FQ68DD2 849 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 SLC24A5Q71RS6 500 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 ADHFE1Q8IWW8 467 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 NLRP7Q8WX94 980 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 NAP1L4Q99733 375 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 NIFKQ9BYG3 293 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 FAM50BQ9Y247 325 aa17.65■□□□□ 0.42
CCDC88B-205ENST00000472524 TBKBP1A7MCY6 615 aa17.64■□□□□ 0.41
CCDC88B-205ENST00000472524 DCXO43602 365 aa17.64■□□□□ 0.41
CCDC88B-205ENST00000472524 EIF4BP23588 611 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-205ENST00000472524 PSMC5P62195 406 aa17.64■□□□□ 0.41
CCDC88B-205ENST00000472524 ST3GAL1Q11201 340 aa17.64■□□□□ 0.41
CCDC88B-205ENST00000472524 SPOUT1Q5T280 376 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-205ENST00000472524 HAS1Q92839 578 aa17.64■□□□□ 0.41
CCDC88B-205ENST00000472524 RNF216Q9NWF9 866 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-205ENST00000472524 PRKAG3Q9UGI9 489 aa17.64■□□□□ 0.41
CCDC88B-205ENST00000472524 MBTPS2O43462 519 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 ITGB1P05556 798 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 ZSCAN20P17040 1043 aaPredicted RBP17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 FGFR4P22455 802 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 IRS1P35568 1242 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 QARSP47897 775 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 TRIM29Q14134 588 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 DSC3Q14574 896 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 SMAD2Q15796 467 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 FAM102BQ5T8I3 360 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 NCAPH2Q6IBW4 605 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 FAM43BQ6ZT52 329 aaPredicted RBP17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 ANO5Q75V66 913 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 ADGRD2Q7Z7M1 963 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 ZNF710Q8N1W2 664 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 KLHL23Q8NBE8 558 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 SPPL3Q8TCT6 385 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 TNFRSF25Q93038 417 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 CEP89Q96ST8 783 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 ATP6V0A4Q9HBG4 840 aa17.63■□□□□ 0.41
CCDC88B-205ENST00000472524 BTBD18B2RXH4 712 aa17.62■□□□□ 0.41
CCDC88B-205ENST00000472524 TBX3O15119 743 aa17.62■□□□□ 0.41
CCDC88B-205ENST00000472524 CSDE1O75534 798 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-205ENST00000472524 FGFR1P11362 822 aa17.62■□□□□ 0.41
CCDC88B-205ENST00000472524 DARSP14868 501 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-205ENST00000472524 DNM2P50570 870 aa17.62■□□□□ 0.41
CCDC88B-205ENST00000472524 ADAM15Q13444 863 aa17.62■□□□□ 0.41
CCDC88B-205ENST00000472524 CCDC83Q8IWF9 413 aa17.62■□□□□ 0.41
CCDC88B-205ENST00000472524 DIS3L2Q8IYB7 885 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-205ENST00000472524 P2RX5Q93086 422 aa17.62■□□□□ 0.41
CCDC88B-205ENST00000472524 TMEM161AQ9NX61 479 aa17.62■□□□□ 0.41
CCDC88B-205ENST00000472524 HCSTQ9UBK5 93 aa17.62■□□□□ 0.41
CCDC88B-205ENST00000472524 DKC1O60832 514 aaKnown RBP eCLIP17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 BAG4O95429 457 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 P4HBP07237 508 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 NPEPPSP55786 919 aa17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 SMAD4Q13485 552 aaKnown RBP17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 CSPP1Q1MSJ5 1256 aa17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 NAALADL2Q58DX5 795 aa17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 RHPN2Q8IUC4 686 aa17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 LXNQ9BS40 222 aa17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 GCOM2Q9BZD3 368 aaPredicted RBP17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 CYP26B1Q9NR63 512 aa17.61■□□□□ 0.41
CCDC88B-205ENST00000472524 SUCLA2Q9P2R7 463 aaPredicted RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms