RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SLC52A2Q9HAB3 445 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 PZPP20742 1482 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 H2AFYO75367 372 aaKnown RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 MRPL1Q9BYD6 325 aaKnown RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 IRAK4Q9NWZ3 460 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 MTO1Q9Y2Z2 717 aaKnown RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 PITPNM2Q9BZ72 1349 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 FGAP02671 866 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 APOA5Q6Q788 366 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 FBXO11Q86XK2 927 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 CFAP36Q96G28 342 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 LUZP2Q86TE4 346 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 FAM210AQ96ND0 272 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 ABCA8O94911 1581 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 PNMA6EA0A0J9YXQ4 647 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 WBP4O75554 376 aaKnown RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 CSTF3Q12996 717 aaKnown RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 PDCLQ13371 301 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 COPRSQ9NQ92 184 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 TTLL1O95922 423 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 SLC1A1P43005 524 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 DAB2P98082 770 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 ACBD5Q5T8D3 534 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 RGS9BPQ6ZS82 235 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 F8W031 263 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 USP14P54578 494 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 GPC5P78333 572 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 SP4Q02446 784 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 ITPRIPL1Q6GPH6 555 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 ROPN1BQ9BZX4 212 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 ROPN1Q9HAT0 212 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 CDK12Q9NYV4 1490 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 GSPT1P15170 499 aaKnown RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 PSMC1P62191 440 aaKnown RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 YWHAHQ04917 246 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 GRM1Q13255 1194 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 ZBTB9Q96C00 473 aa14.16□□□□□ -0.14
COL6A3-209ENST00000472056 ADD3Q9UEY8 706 aaKnown RBP14.16□□□□□ -0.14
COL6A3-209ENST00000472056 ILF2Q12905 390 aaKnown RBP14.15□□□□□ -0.14
COL6A3-209ENST00000472056 KRT31Q15323 416 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 ADAT2Q7Z6V5 191 aaKnown RBP14.15□□□□□ -0.14
COL6A3-209ENST00000472056 ADCK1Q86TW2 530 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 ZNF711Q9Y462 761 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 PTCH1Q13635 1447 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 NRBP1Q9UHY1 535 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 CLIC4Q9Y696 253 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 GIMAP8Q8ND71 665 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-209ENST00000472056 TMEM245Q9H330 911 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 DCDC2Q9UHG0 476 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 SNX2O60749 519 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 ZMYM1Q5SVZ6 1142 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 C4orf22Q6V702 233 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 BTBD18B2RXH4 712 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 TNPO2O14787 897 aaKnown RBP14.15□□□□□ -0.14
COL6A3-209ENST00000472056 DTNBO60941 627 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 KCNA3P22001 575 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 SOX6P35712 828 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 FAM133AQ8N9E0 248 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 APBB2Q92870 758 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 PHF21AQ96BD5 680 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 NSMCE4AQ9NXX6 385 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 UFL1O94874 794 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 FAM107AO95990 144 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 XPAP23025 273 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-209ENST00000472056 IL13P35225 146 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 PGM1P36871 562 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 NR5A1Q13285 461 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 USH1GQ495M9 461 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 MB21D1Q8N884 522 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 CALN1Q9BXU9 219 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 CDC42BPGQ6DT37 1551 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 MARK3P27448 753 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 UGP2Q16851 508 aa14.15□□□□□ -0.14
COL6A3-209ENST00000472056 ZMYND8Q9ULU4 1186 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-209ENST00000472056 CFLARO15519 480 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 MYO1DO94832 1006 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 MOCS3O95396 460 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 MDH1P40925 334 aaKnown RBP14.14□□□□□ -0.15
COL6A3-209ENST00000472056 FAM192AQ9GZU8 254 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 BLVRAP53004 296 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 UNC13DQ70J99 1090 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 GAS2L3Q86XJ1 694 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 GJA10Q969M2 543 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 PHACTR3Q96KR7 559 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 FBXO2Q9UK22 296 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-209ENST00000472056 CDY2AQ9Y6F7 541 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 CDY1Q9Y6F8 540 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 NUP153P49790 1475 aaKnown RBP14.14□□□□□ -0.15
COL6A3-209ENST00000472056 PRPF3O43395 683 aaKnown RBP14.14□□□□□ -0.15
COL6A3-209ENST00000472056 SCP2P22307 547 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 PURAQ00577 322 aaKnown RBP14.14□□□□□ -0.15
COL6A3-209ENST00000472056 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.14□□□□□ -0.15
COL6A3-209ENST00000472056 KHDRBS2Q5VWX1 349 aaKnown RBP14.14□□□□□ -0.15
COL6A3-209ENST00000472056 TRPM8Q7Z2W7 1104 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 TTLL11Q8NHH1 800 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 SCFD1Q8WVM8 642 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 ITIH6Q6UXX5 1313 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 KYAT1Q16773 422 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 PPP1R18Q6NYC8 613 aa14.14□□□□□ -0.15
COL6A3-209ENST00000472056 METTL23Q86XA0 190 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms