RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 LRRC10BA6NIK2 292 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 F5H423 210 aaPredicted RBP11.56□□□□□ -0.56
CHD3-208ENST00000470531 AKAP3O75969 853 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 TRIM37O94972 964 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 EIF2AK2P19525 551 aaKnown RBP11.56□□□□□ -0.56
CHD3-208ENST00000470531 SLC29A2Q14542 456 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 MYCBPAPQ8TBZ2 947 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 C18orf8Q96DM3 657 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 CYFIP2Q96F07 1278 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 ERGIC2Q96RQ1 377 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 AMNQ9BXJ7 453 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 DHX36Q9H2U1 1008 aaKnown RBP11.56□□□□□ -0.56
CHD3-208ENST00000470531 KLC4Q9NSK0 619 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 PI4K2BG5E9Z4 385 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 PEX3P56589 373 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 OSTNP61366 133 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 XKR9Q5GH70 373 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 BSPRYQ5W0U4 402 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 ZFPM1Q8IX07 1006 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 CCDC13Q8IYE1 715 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 NEDD1Q8NHV4 660 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 ZNF577Q9BSK1 485 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 THAP2Q9H0W7 228 aa11.56□□□□□ -0.56
CHD3-208ENST00000470531 MAGED2Q9UNF1 606 aaPredicted RBP11.56□□□□□ -0.56
CHD3-208ENST00000470531 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.56□□□□□ -0.56
CHD3-208ENST00000470531 RASSF10A6NK89 507 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 F5H6K3 240 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 GOLGA8RI6L899 631 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 RASGRF2O14827 1237 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 ZBTB5O15062 677 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 PCP11498 1178 aaKnown RBP11.55□□□□□ -0.56
CHD3-208ENST00000470531 CHN1P15882 459 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 KLRC3Q07444 240 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 ABCB5Q2M3G0 1257 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 CATSPER3Q86XQ3 398 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 USP38Q8NB14 1042 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 NEK9Q8TD19 979 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 PI4K2AQ9BTU6 479 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 MMTAG2Q9BU76 263 aaKnown RBP11.55□□□□□ -0.56
CHD3-208ENST00000470531 NSRP1Q9H0G5 558 aaKnown RBP11.55□□□□□ -0.56
CHD3-208ENST00000470531 SPATS2LQ9NUQ6 558 aaKnown RBP11.55□□□□□ -0.56
CHD3-208ENST00000470531 ANKFY1Q9P2R3 1169 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 PSMC2P35998 433 aaKnown RBP11.55□□□□□ -0.56
CHD3-208ENST00000470531 PPP2R2AP63151 447 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 IRX4P78413 519 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 KCNMA1Q12791 1236 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 PPP2R5DQ14738 602 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 SGO2Q562F6 1265 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 CENPPQ6IPU0 288 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 SYCE1Q8N0S2 351 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 FBXO25Q8TCJ0 367 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 EPS8L3Q8TE67 593 aaKnown RBP11.55□□□□□ -0.56
CHD3-208ENST00000470531 SCFD1Q8WVM8 642 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 RNF25Q96BH1 459 aaPredicted RBP11.55□□□□□ -0.56
CHD3-208ENST00000470531 NAGPAQ9UK23 515 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 ZNF148Q9UQR1 794 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.55□□□□□ -0.56
CHD3-208ENST00000470531 L3MBTL1Q9Y468 752 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 DAGLAQ9Y4D2 1042 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 ARFGEF2Q9Y6D5 1785 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 PALM3A6NDB9 673 aaPredicted RBP11.55□□□□□ -0.56
CHD3-208ENST00000470531 BCRP11274 1271 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 CD19P15391 556 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 CD58P19256 250 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 FECHP22830 423 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 GRAPQ13588 217 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 ASPRV1Q53RT3 343 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 C10orf76Q5T2E6 689 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 MIER3Q7Z3K6 550 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 RPUSD2Q8IZ73 545 aaKnown RBP11.55□□□□□ -0.56
CHD3-208ENST00000470531 GRAPLQ8TC17 118 aaPredicted RBP11.55□□□□□ -0.56
CHD3-208ENST00000470531 WHAMMQ8TF30 809 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 PWWP2AQ96N64 755 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 FNBP1Q96RU3 617 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 POP1Q99575 1024 aaKnown RBP11.55□□□□□ -0.56
CHD3-208ENST00000470531 RUSC1Q9BVN2 902 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 EPN3Q9H201 632 aa11.55□□□□□ -0.56
CHD3-208ENST00000470531 LMTK3Q96Q04 1460 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 KDM3AQ9Y4C1 1321 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 PVALEFA0A1B0GWK0 134 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 SLC16A4O15374 487 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 CYP26A1O43174 497 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 GNA14O95837 355 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 PTGISQ16647 500 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 ARMC3Q5W041 872 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 EEPD1Q7L9B9 569 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 PRUNE1Q86TP1 453 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 KLF6Q99612 283 aaPredicted RBP11.54□□□□□ -0.56
CHD3-208ENST00000470531 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.54□□□□□ -0.562e-8■■■■■ 40.2
CHD3-208ENST00000470531 ANAPC4Q9UJX5 808 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 PDHA1P08559 390 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 CYP11B2P19099 503 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 IFI35P80217 286 aaPredicted RBP11.54□□□□□ -0.56
CHD3-208ENST00000470531 SLC35G1Q2M3R5 365 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 POMGNT1Q8WZA1 660 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 TNFRSF25Q93038 417 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 RSRC1Q96IZ7 334 aaKnown RBP11.54□□□□□ -0.56
CHD3-208ENST00000470531 SEC16BQ96JE7 1060 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 PARVGQ9HBI0 331 aa11.54□□□□□ -0.56
CHD3-208ENST00000470531 FBXO28Q9NVF7 368 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms