RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 OSMRQ99650 979 aa22.29■■□□□ 1.16
NPHP4-206ENST00000468253 NT5C3AQ9H0P0 336 aa22.29■■□□□ 1.16
NPHP4-206ENST00000468253 ATP6V0A4Q9HBG4 840 aa22.29■■□□□ 1.16
NPHP4-206ENST00000468253 XPNPEP1Q9NQW7 623 aa22.29■■□□□ 1.16
NPHP4-206ENST00000468253 ST3GAL5Q9UNP4 418 aa22.29■■□□□ 1.16
NPHP4-206ENST00000468253 SCN5AQ14524 2016 aa22.28■■□□□ 1.16
NPHP4-206ENST00000468253 A0A087WWV3 80 aa22.28■■□□□ 1.16
NPHP4-206ENST00000468253 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.28■■□□□ 1.16
NPHP4-206ENST00000468253 GRXCR1A8MXD5 290 aa22.28■■□□□ 1.16
NPHP4-206ENST00000468253 F13A1P00488 732 aa22.28■■□□□ 1.16
NPHP4-206ENST00000468253 CYP11B2P19099 503 aa22.28■■□□□ 1.16
NPHP4-206ENST00000468253 CDC25AP30304 524 aa22.28■■□□□ 1.16
NPHP4-206ENST00000468253 ARL2P36404 184 aa22.28■■□□□ 1.16
NPHP4-206ENST00000468253 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.28■■□□□ 1.16
NPHP4-206ENST00000468253 NLRP7Q8WX94 980 aa22.28■■□□□ 1.16
NPHP4-206ENST00000468253 TMEM143Q96AN5 459 aa22.28■■□□□ 1.16
NPHP4-206ENST00000468253 USP28Q96RU2 1077 aa22.28■■□□□ 1.16
NPHP4-206ENST00000468253 PBX4Q9BYU1 374 aa22.28■■□□□ 1.16
NPHP4-206ENST00000468253 TSPYL2Q9H2G4 693 aaPredicted RBP22.28■■□□□ 1.16
NPHP4-206ENST00000468253 DDX19AQ9NUU7 478 aaKnown RBP22.28■■□□□ 1.16
NPHP4-206ENST00000468253 COL4A3BPQ9Y5P4 624 aa22.28■■□□□ 1.16
NPHP4-206ENST00000468253 WDR81Q562E7 1941 aa22.27■■□□□ 1.16
NPHP4-206ENST00000468253 ARHGEF35A5YM69 484 aa22.27■■□□□ 1.16
NPHP4-206ENST00000468253 PP2D1A8MPX8 630 aa22.27■■□□□ 1.16
NPHP4-206ENST00000468253 GJB5O95377 273 aa22.27■■□□□ 1.16
NPHP4-206ENST00000468253 EYA4O95677 639 aa22.27■■□□□ 1.16
NPHP4-206ENST00000468253 UBA7P41226 1012 aa22.27■■□□□ 1.16
NPHP4-206ENST00000468253 LAMTOR4Q0VGL1 99 aa22.27■■□□□ 1.16
NPHP4-206ENST00000468253 NFX1Q12986 1120 aaKnown RBP22.27■■□□□ 1.16
NPHP4-206ENST00000468253 PADI6Q6TGC4 694 aa22.27■■□□□ 1.16
NPHP4-206ENST00000468253 RTN4RL1Q86UN2 441 aaPredicted RBP22.27■■□□□ 1.16
NPHP4-206ENST00000468253 FAM228AQ86W67 206 aa22.27■■□□□ 1.16
NPHP4-206ENST00000468253 RAD9AQ99638 391 aa22.27■■□□□ 1.16
NPHP4-206ENST00000468253 TANC1Q9C0D5 1861 aa22.27■■□□□ 1.16
NPHP4-206ENST00000468253 RNF216Q9NWF9 866 aaPredicted RBP22.27■■□□□ 1.16
NPHP4-206ENST00000468253 A0A087WZ62 844 aa22.26■■□□□ 1.15
NPHP4-206ENST00000468253 DNAJB2P25686 324 aa22.26■■□□□ 1.15
NPHP4-206ENST00000468253 DEFB103AP81534 67 aa22.26■■□□□ 1.15
NPHP4-206ENST00000468253 PCBP1Q15365 356 aaKnown RBP eCLIP22.26■■□□□ 1.15
NPHP4-206ENST00000468253 SRGAP1Q7Z6B7 1085 aa22.26■■□□□ 1.15
NPHP4-206ENST00000468253 LINC00301Q8NCQ3 95 aa22.26■■□□□ 1.15
NPHP4-206ENST00000468253 TIFAQ96CG3 184 aa22.26■■□□□ 1.15
NPHP4-206ENST00000468253 FDXACB1Q9BRP7 624 aaPredicted RBP22.26■■□□□ 1.15
NPHP4-206ENST00000468253 CCSER1Q9C0I3 900 aa22.26■■□□□ 1.15
NPHP4-206ENST00000468253 TMX1Q9H3N1 280 aa22.26■■□□□ 1.15
NPHP4-206ENST00000468253 IFT122Q9HBG6 1241 aa22.26■■□□□ 1.15
NPHP4-206ENST00000468253 EVPLQ92817 2033 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 BRD1O95696 1058 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 FAM189BP81408 668 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 CABP7Q86V35 215 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 IFNLR1Q8IU57 520 aaPredicted RBP22.25■■□□□ 1.15
NPHP4-206ENST00000468253 KSR1Q8IVT5 923 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 SCLT1Q96NL6 688 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 PNMA5Q96PV4 448 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 PPP1R16BQ96T49 567 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 ZBED2Q9BTP6 218 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 NFKBIZQ9BYH8 718 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 BHMT2Q9H2M3 363 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 CHST12Q9NRB3 414 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 RGS18Q9NS28 235 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 FBXO2Q9UK22 296 aaPredicted RBP22.25■■□□□ 1.15
NPHP4-206ENST00000468253 INSL6Q9Y581 213 aa22.25■■□□□ 1.15
NPHP4-206ENST00000468253 PPP6R2O75170 966 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 YEATS4O95619 227 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 SRGAP2CP0DJJ0 459 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 MARCKSP29966 332 aaPredicted RBP22.24■■□□□ 1.15
NPHP4-206ENST00000468253 PBX2P40425 430 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 GRB10Q13322 594 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 TFDP1Q14186 410 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 DSC3Q14574 896 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 MYOCDQ8IZQ8 938 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 CRIPAKQ8N1N5 446 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 KRI1Q8N9T8 703 aaKnown RBP22.24■■□□□ 1.15
NPHP4-206ENST00000468253 CALML4Q96GE6 196 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 SEMA6BQ9H3T3 888 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 C1orf112Q9NSG2 853 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 TFIP11Q9UBB9 837 aaKnown RBP22.24■■□□□ 1.15
NPHP4-206ENST00000468253 CFAP45Q9UL16 551 aa22.24■■□□□ 1.15
NPHP4-206ENST00000468253 TLL1O43897 1013 aa22.23■■□□□ 1.15
NPHP4-206ENST00000468253 USO1O60763 962 aaKnown RBP22.23■■□□□ 1.15
NPHP4-206ENST00000468253 ZSCAN20P17040 1043 aaPredicted RBP22.23■■□□□ 1.15
NPHP4-206ENST00000468253 SFPQP23246 707 aaKnown RBP eCLIP22.23■■□□□ 1.15
NPHP4-206ENST00000468253 RABGGTBP53611 331 aa22.23■■□□□ 1.15
NPHP4-206ENST00000468253 PTENP60484 403 aa22.23■■□□□ 1.15
NPHP4-206ENST00000468253 HTRA4P83105 476 aaPredicted RBP22.23■■□□□ 1.15
NPHP4-206ENST00000468253 CEBPZQ03701 1054 aaKnown RBP22.23■■□□□ 1.15
NPHP4-206ENST00000468253 GRIN1Q05586 938 aa22.23■■□□□ 1.15
NPHP4-206ENST00000468253 PKP1Q13835 747 aa22.23■■□□□ 1.15
NPHP4-206ENST00000468253 TMEM119Q4V9L6 283 aa22.23■■□□□ 1.15
NPHP4-206ENST00000468253 SLC24A5Q71RS6 500 aa22.23■■□□□ 1.15
NPHP4-206ENST00000468253 CDK5RAP3Q96JB5 506 aa22.23■■□□□ 1.15
NPHP4-206ENST00000468253 NLRP4Q96MN2 994 aa22.23■■□□□ 1.15
NPHP4-206ENST00000468253 CSRNP2Q9H175 543 aa22.23■■□□□ 1.15
NPHP4-206ENST00000468253 E9PMD0 336 aa22.22■■□□□ 1.15
NPHP4-206ENST00000468253 GLRA2P23416 452 aa22.22■■□□□ 1.15
NPHP4-206ENST00000468253 STK38Q15208 465 aa22.22■■□□□ 1.15
NPHP4-206ENST00000468253 ZNF697Q5TEC3 545 aa22.22■■□□□ 1.15
NPHP4-206ENST00000468253 FOXD4L5Q5VV16 416 aaPredicted RBP22.22■■□□□ 1.15
NPHP4-206ENST00000468253 SYT2Q8N9I0 419 aaPredicted RBP22.22■■□□□ 1.15
NPHP4-206ENST00000468253 RNF149Q8NC42 400 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms