RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 PPME1Q9Y570 386 aa8.18□□□□□ -1.1
PTPRF-210ENST00000463041 PCDHB12Q9Y5F1 795 aa8.18□□□□□ -1.1
PTPRF-210ENST00000463041 MRPL42Q9Y6G3 142 aaKnown RBP8.18□□□□□ -1.1
PTPRF-210ENST00000463041 EML1O00423 815 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 HOXA2O43364 376 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 SLC37A4O43826 429 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 EOMESO95936 686 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 GPC3P51654 580 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 TRIM29Q14134 588 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 COL19A1Q14993 1142 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 CSPP1Q1MSJ5 1256 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 MTERF2Q49AM1 385 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 PAN2Q504Q3 1202 aaKnown RBP8.17□□□□□ -1.1
PTPRF-210ENST00000463041 TCEAL5Q5H9L2 206 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 SPOUT1Q5T280 376 aaKnown RBP8.17□□□□□ -1.1
PTPRF-210ENST00000463041 FAM102BQ5T8I3 360 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 ANO5Q75V66 913 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 C4orf19Q8IY42 314 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 KLHL23Q8NBE8 558 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 NSUN7Q8NE18 718 aaKnown RBP8.17□□□□□ -1.1
PTPRF-210ENST00000463041 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.17□□□□□ -1.1
PTPRF-210ENST00000463041 NEK9Q8TD19 979 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 NLRP7Q8WX94 980 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 PPP2R3CQ969Q6 453 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 PPP1R16BQ96T49 567 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 ALG13Q9NP73 1137 aaKnown RBP8.17□□□□□ -1.1
PTPRF-210ENST00000463041 DACT1Q9NYF0 836 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 SUCLA2Q9P2R7 463 aaPredicted RBP8.17□□□□□ -1.1
PTPRF-210ENST00000463041 SEPT9Q9UHD8 586 aaPredicted RBP8.17□□□□□ -1.1
PTPRF-210ENST00000463041 VAV3Q9UKW4 847 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 PCDHA12Q9UN75 941 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 FAM50BQ9Y247 325 aa8.17□□□□□ -1.1
PTPRF-210ENST00000463041 A0A0U1RQF3 1178 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 GRXCR2A6NFK2 248 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 TBKBP1A7MCY6 615 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 BTBD18B2RXH4 712 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 ASAP2O43150 1006 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 GAS2O43903 313 aaKnown RBP8.16□□□□□ -1.1
PTPRF-210ENST00000463041 LARGE1O95461 756 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 MMP1P03956 469 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 ITGB1P05556 798 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 SKIP12755 728 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 KCNA5P22460 613 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 UBE3AQ05086 875 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 NR5A1Q13285 461 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 CAMK1Q14012 370 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 SAFBQ15424 915 aaKnown RBP eCLIP8.16□□□□□ -1.1
PTPRF-210ENST00000463041 CTC1Q2NKJ3 1217 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 EARS2Q5JPH6 523 aaKnown RBP8.16□□□□□ -1.1
PTPRF-210ENST00000463041 PDE12Q6L8Q7 609 aaKnown RBP8.16□□□□□ -1.1
PTPRF-210ENST00000463041 ZNF410Q86VK4 478 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 ECHDC2Q86YB7 292 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 POF1BQ8WVV4 589 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 SLC7A3Q8WY07 619 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 RSPH1Q8WYR4 309 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 TNFRSF25Q93038 417 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 CEP170P1Q96L14 293 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 ZSCAN31Q96LW9 406 aaPredicted RBP8.16□□□□□ -1.1
PTPRF-210ENST00000463041 SCLT1Q96NL6 688 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 LLPHQ9BRT6 129 aaKnown RBP8.16□□□□□ -1.1
PTPRF-210ENST00000463041 TRAIPQ9BWF2 469 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 TMEM117Q9H0C3 514 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 DHX33Q9H6R0 707 aaKnown RBP8.16□□□□□ -1.1
PTPRF-210ENST00000463041 C5orf42Q9H799 3197 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 ZSWIM4Q9H7M6 989 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 CYP26B1Q9NR63 512 aa8.16□□□□□ -1.1
PTPRF-210ENST00000463041 TYW1Q9NV66 732 aaKnown RBP8.16□□□□□ -1.1
PTPRF-210ENST00000463041 KIAA1671Q9BY89 1806 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 A0A087WZ62 844 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 TMEM150BA6NC51 233 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 DTNBO60941 627 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 SLITRK3O94933 977 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 XRCC6P12956 609 aaKnown RBP eCLIP8.15□□□□□ -1.1
PTPRF-210ENST00000463041 IBSPP21815 317 aaPredicted RBP8.15□□□□□ -1.1
PTPRF-210ENST00000463041 RFC5P40937 340 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 GATMP50440 423 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 NPEPPSP55786 919 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 PLCB3Q01970 1234 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 SPIRE1Q08AE8 756 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 ADAM15Q13444 863 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 DRP2Q13474 957 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 CALCRLQ16602 461 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 PTCRAQ6ISU1 281 aaPredicted RBP8.15□□□□□ -1.1
PTPRF-210ENST00000463041 RHPN2Q8IUC4 686 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 TPH2Q8IWU9 490 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 FAM178BQ8IXR5 827 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 DIS3L2Q8IYB7 885 aaKnown RBP8.15□□□□□ -1.1
PTPRF-210ENST00000463041 ABI1Q8IZP0 508 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 TCP11Q8WWU5 503 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 ZNF668Q96K58 619 aaPredicted RBP8.15□□□□□ -1.1
PTPRF-210ENST00000463041 NECAB3Q96P71 396 aaPredicted RBP8.15□□□□□ -1.1
PTPRF-210ENST00000463041 CASD1Q96PB1 797 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 HSD17B14Q9BPX1 270 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 SH2D3AQ9BRG2 576 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 FDXACB1Q9BRP7 624 aaPredicted RBP8.15□□□□□ -1.1
PTPRF-210ENST00000463041 CWH43Q9H720 699 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 CLDND1Q9NY35 253 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 RGL1Q9NZL6 768 aa8.15□□□□□ -1.1
PTPRF-210ENST00000463041 PUF60Q9UHX1 559 aaKnown RBP8.15□□□□□ -1.1
PTPRF-210ENST00000463041 ATG2AQ2TAZ0 1938 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms