RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	MSH4	O15457	936 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	PRPF3	O43395	683 aa	Known RBP	12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	OAT	P04181	439 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	PSAP	P07602	524 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	EIF4B	P23588	611 aa	Known RBP	12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	METAP2	P50579	478 aa	Known RBP eCLIP	12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	GPC3	P51654	580 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	NLRP11	P59045	1033 aa	Known RBP	12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	DRP2	Q13474	957 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	SPOUT1	Q5T280	376 aa	Known RBP	12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	EFCAB12	Q6NXP0	572 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	REXO1	Q8N1G1	1221 aa	Known RBP	12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	SLC39A11	Q8N1S5	342 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	LRRC43	Q8N309	656 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	FBXL6	Q8N531	539 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	METTL13	Q8N6R0	699 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	MICAL1	Q8TDZ2	1067 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	TCF25	Q9BQ70	676 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815	FRYL	O94915	3013 aa		12.64	□□□□□ -0.39
PTPN7-204	ENST00000462815		A0A0U1RQF3	1178 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	MAGEB2	O15479	319 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	DARS	P14868	501 aa	Known RBP	12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	TEC	P42680	631 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	PTPN5	P54829	565 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	PRKCE	Q02156	737 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	KRT32	Q14532	448 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	PRR16	Q569H4	304 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	MCTP2	Q6DN12	878 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	CKAP2L	Q8IYA6	745 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	FEZF2	Q8TBJ5	459 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	SLC5A5	Q92911	643 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	PHKB	Q93100	1093 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	NGRN	Q9NPE2	291 aa	Known RBP	12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	CEP131	Q9UPN4	1083 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	PLXNA3	P51805	1871 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	DENND4A	Q7Z401	1863 aa		12.63	□□□□□ -0.39
PTPN7-204	ENST00000462815	IGKV6-21	A0A0C4DH24	114 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	C2orf71	A6NGG8	1288 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	WDR64	B1ANS9	1081 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815		M0R2N6	131 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	HOXA2	O43364	376 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	PDGFB	P01127	241 aa	Predicted RBP	12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	FGFR4	P22455	802 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	PPM1A	P35813	382 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	EVC	P57679	992 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	LLGL2	Q6P1M3	1020 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815		Q6ZUG5	572 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	TRMT1L	Q7Z2T5	733 aa	Known RBP	12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	TMEM173	Q86WV6	379 aa	Predicted RBP	12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	MRPL43	Q8N983	215 aa	Known RBP	12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	BRF1	Q92994	677 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	GJA10	Q969M2	543 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	ZNF668	Q96K58	619 aa	Predicted RBP	12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	FAM167A	Q96KS9	214 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	ZNF558	Q96NG5	402 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	TRAIP	Q9BWF2	469 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	APOL5	Q9BWW9	433 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	UNC45A	Q9H3U1	944 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	C6orf50	Q9HD87	102 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	ENTPD7	Q9NQZ7	604 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	DISC1	Q9NRI5	854 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	AKT3	Q9Y243	479 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	SNX14	Q9Y5W7	946 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	HCFC2	Q9Y5Z7	792 aa		12.62	□□□□□ -0.39
PTPN7-204	ENST00000462815	CACNA1H	O95180	2353 aa		12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	TMEM150B	A6NC51	233 aa		12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	CLASP2	O75122	1294 aa	Known RBP	12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	PSMD10	O75832	226 aa		12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	HMGB1	P09429	215 aa	Known RBP	12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	HOXB8	P17481	243 aa	Predicted RBP	12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	HSPA4	P34932	840 aa		12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	NPY5R	Q15761	445 aa		12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	ZNF710	Q8N1W2	664 aa		12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	HELQ	Q8TDG4	1101 aa		12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	BCL7C	Q8WUZ0	217 aa	Predicted RBP	12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	RIT2	Q99578	217 aa		12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	RNF26	Q9BY78	433 aa	Predicted RBP	12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	NIFK	Q9BYG3	293 aa	Known RBP	12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	ZBP1	Q9H171	429 aa		12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	POMK	Q9H5K3	350 aa		12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	SPG21	Q9NZD8	308 aa		12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	12.61	□□□□□ -0.39
PTPN7-204	ENST00000462815	CCDC196	A0A1B0GTZ2	297 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	MEIS3P2	A8K0S8	358 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	C2CD4D	B7Z1M9	353 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	B4GALT3	O60512	393 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	CSDE1	O75534	798 aa	Known RBP	12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	EOMES	O95936	686 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	IFNAR1	P17181	557 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	GNA11	P29992	359 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	AVPR2	P30518	371 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	SMC1A	Q14683	1233 aa	Known RBP	12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	SUGP1	Q8IWZ8	645 aa	Known RBP	12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	CCDC12	Q8WUD4	166 aa	Predicted RBP	12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	CASP10	Q92851	521 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	CCDC136	Q96JN2	1154 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	MBOAT7	Q96N66	472 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	MAP7D2	Q96T17	732 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	PRRX2	Q99811	253 aa		12.6	□□□□□ -0.39
PTPN7-204	ENST00000462815	VN1R3	Q9BXE9	311 aa		12.6	□□□□□ -0.39

Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms