RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 EXOC1LA0A1B0GW35 172 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 CCDC22O60826 627 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 GRAPQ13588 217 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 BZW1Q7L1Q6 419 aaKnown RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 XXYLT1Q8NBI6 393 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 GRAPLQ8TC17 118 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 THOC1Q96FV9 657 aaKnown RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 GINM1Q9NU53 330 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 TNS2Q63HR2 1409 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 TTI1O43156 1089 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 ATP2C2O75185 946 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 KRT38O76015 456 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 HSPA8P11142 646 aaKnown RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 TMEM179Q6ZVK1 233 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 GTF3C4Q9UKN8 822 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 PRAMEF22A3QJZ6 481 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 NEBLO76041 1014 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 SEPT6Q14141 434 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 KPNB1Q14974 876 aaKnown RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 CREG2Q8IUH2 290 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 TGFBRAP1Q8WUH2 860 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 TMEM109Q9BVC6 243 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 GPHNQ9NQX3 736 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 ZBTB1Q9Y2K1 713 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 H3BQF6 201 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 RTN2O75298 545 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 RDM1Q8NG50 284 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 ATL2Q8NHH9 583 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 SEC16BQ96JE7 1060 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 RBM12Q9NTZ6 932 aaKnown RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 BTG4Q9NY30 223 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 MAP3K20Q9NYL2 800 aaKnown RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 CAMTA1Q9Y6Y1 1673 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 CFAP69A5D8W1 941 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 PPP1R12AO14974 1030 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 CHGBP05060 677 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 UCHL3P15374 230 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 BTDP43251 543 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 ICA1Q05084 483 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 MAPK7Q13164 816 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 ARHGEF2Q92974 986 aaKnown RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 ZFP91Q96JP5 570 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-216ENST00000461872 SERPINI1Q99574 410 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 PITPNM3Q9BZ71 974 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 CCDC88AQ3V6T2 1871 aa7.55□□□□□ -1.2
SYNE1-216ENST00000461872 MAP3K7O43318 606 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 HNRNPH1P31943 449 aaKnown RBP7.54□□□□□ -1.2
SYNE1-216ENST00000461872 ARL4CP56559 192 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 SLC10A5Q5PT55 438 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 C16orf86Q6ZW13 317 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 ATP11CQ8NB49 1132 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 PSMB7Q99436 277 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 FAM192AQ9GZU8 254 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 RGPD8O14715 1765 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-216ENST00000461872 PALM3A6NDB9 673 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-216ENST00000461872 ACTN1P12814 892 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 GYG1P46976 350 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 SPATA21Q7Z572 469 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 ST13P4Q8IZP2 240 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-216ENST00000461872 COA1Q9GZY4 146 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 NARFQ9UHQ1 456 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 ITGB1BP2Q9UKP3 347 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 RIC1Q4ADV7 1423 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 NUP188Q5SRE5 1749 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 TRAPPC3O43617 180 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 GNPTABQ3T906 1256 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 DNAL1Q4LDG9 190 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 FBXO33Q7Z6M2 555 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 MMADHCQ9H3L0 296 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-216ENST00000461872 HDAC6Q9UBN7 1215 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 NAGPAQ9UK23 515 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-216ENST00000461872 FAM205AQ6ZU69 1335 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 MYH2Q9UKX2 1941 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 WFS1O76024 890 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 PTENP60484 403 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 CYB5D1Q6P9G0 228 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 MIER3Q7Z3K6 550 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 ZIM3Q96PE6 472 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 PLIN2Q99541 437 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 TMEM51Q9NW97 253 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 CNTNAP4Q9C0A0 1308 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 FAM47DPA6NHR8 397 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 MED7O43513 233 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 KRT7P08729 469 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 CDK8P49336 464 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 ARHGAP4P98171 946 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 GOLGA8FQ08AF8 430 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 GOLGA8DPQ0D2H9 430 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 FAM47AQ5JRC9 791 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 VGLL2Q8N8G2 317 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 CHP1Q99653 195 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 AGTPBP1Q9UPW5 1226 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 AXIN2Q9Y2T1 843 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 LRRIQ3A6PVS8 624 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-216ENST00000461872 PSTPIP1O43586 416 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 FTCDO95954 541 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 APEX2Q9UBZ4 518 aa7.54□□□□□ -1.2
SYNE1-216ENST00000461872 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-216ENST00000461872 PRKAB2O43741 272 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms