RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 MADDQ8WXG6 1647 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 KCNK3O14649 394 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 OGNP20774 298 aaKnown RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 IQCB1Q15051 598 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 TRPC7Q9HCX4 862 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 TNRQ92752 1358 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 BTBD18B2RXH4 712 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 SEMA3DO95025 777 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 DNA2P51530 1060 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 RAB25P57735 213 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 C16orf72Q14CZ0 275 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 SGSM1Q2NKQ1 1148 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 CENPPQ6IPU0 288 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 ZNF544Q6NX49 715 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 MTHFD1LQ6UB35 978 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 APPL1Q9UKG1 709 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 LRCH1Q9Y2L9 728 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 SPATA31E1Q6ZUB1 1445 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 MYO16Q9Y6X6 1858 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 SAGE2PA6NJ88 616 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 CAPN15O75808 1086 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 RALBP11234 206 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 POLR2EP19388 210 aaKnown RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 DNAJB2P25686 324 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 BTNL9Q6UXG8 535 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 LPIN2Q92539 896 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 USP28Q96RU2 1077 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 ADD3Q9UEY8 706 aaKnown RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 MSH5O43196 834 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 NCKAP1LP55160 1127 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 CDK17Q00537 523 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 NAALADL2Q58DX5 795 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 KRT73Q86Y46 540 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 DLG3Q92796 817 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 SETDB2Q96T68 719 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 CIDEBQ9UHD4 219 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 NOP56O00567 594 aaKnown RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 LSM1O15116 133 aaKnown RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 MYO1DO94832 1006 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 MARCKSP29966 332 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 CARSP49589 748 aaKnown RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 ZNF135P52742 658 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 AP3B2Q13367 1082 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 PROSER2Q86WR7 435 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 ULK2Q8IYT8 1036 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 PHF21AQ96BD5 680 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 CHAMP1Q96JM3 812 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 METTL22Q9BUU2 404 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 DCLRE1BQ9H816 532 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 OTOFQ9HC10 1997 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 CACNA1HO95180 2353 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 MFAP3LO75121 409 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 TADA3O75528 432 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 AP1G2O75843 785 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 HNRNPCP07910 306 aaKnown RBP eCLIP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 TBC1D19Q8N5T2 526 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 NECTIN2Q92692 538 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 SH3GL2Q99962 352 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 WDR35Q9P2L0 1181 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 TRPM6Q9BX84 2022 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 GAS7O60861 476 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 ARL4AP40617 200 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 CCDC144BQ3MJ40 725 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 SUGP1Q8IWZ8 645 aaKnown RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 MCPH1Q8NEM0 835 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 MAGEB10Q96LZ2 347 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 MRPL11Q9Y3B7 192 aaKnown RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 YARSP54577 528 aaKnown RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 DMPKQ09013 629 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 RAB42Q8N4Z0 105 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 FOPNLQ96NB1 174 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 TRIM54Q9BYV2 358 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 TMEM245Q9H330 911 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 PRDM1O75626 825 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 ADSLP30566 484 aaPredicted RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 ECE1P42892 770 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 RPL19P84098 196 aaKnown RBP5.55□□□□□ -1.52
CSMD3-204ENST00000455883 GUCY2DQ02846 1103 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 KCNB1Q14721 858 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 WDR93Q6P2C0 686 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 FAM161BQ96MY7 647 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 NACC1Q96RE7 527 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 CEP72Q9P209 647 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 POLKQ9UBT6 870 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 SOX13Q9UN79 622 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 SCN4AP35499 1836 aa5.55□□□□□ -1.52
CSMD3-204ENST00000455883 PDE9AO76083 593 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 PRLRP16471 622 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 JAK1P23458 1154 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 MAP4P27816 1152 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 PSMC2P35998 433 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 EPM2AIP1Q7L775 607 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 DIS3L2Q8IYB7 885 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 ZNF513Q8N8E2 541 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 ARHGEF1Q92888 912 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 BTBD6Q96KE9 485 aa5.54□□□□□ -1.52
CSMD3-204ENST00000455883 XPO6Q96QU8 1125 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 LSG1Q9H089 658 aaKnown RBP5.54□□□□□ -1.52
CSMD3-204ENST00000455883 TAF1DQ9H5J8 278 aaPredicted RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms