RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.19□□□□□ -0.3
COL27A1-202ENST00000451716 FRMPD4Q14CM0 1322 aa13.19□□□□□ -0.3
COL27A1-202ENST00000451716 LRRIQ3A6PVS8 624 aaPredicted RBP13.18□□□□□ -0.3
COL27A1-202ENST00000451716 TRIM49P0CI25 452 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 TRIM49CP0CI26 452 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 MYBL2P10244 700 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 TUBB4BP68371 445 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 MRPS9P82933 396 aaKnown RBP13.18□□□□□ -0.3
COL27A1-202ENST00000451716 CASP8Q14790 479 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 B3GNT9Q6UX72 402 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 MIER3Q7Z3K6 550 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 PACS2Q86VP3 889 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 DAW1Q8N136 415 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 TAAR1Q96RJ0 339 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 SIX2Q9NPC8 291 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 MYCLP12524 364 aaPredicted RBP13.18□□□□□ -0.3
COL27A1-202ENST00000451716 BAG6P46379 1132 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 RNASE9P60153 205 aaKnown RBP13.18□□□□□ -0.3
COL27A1-202ENST00000451716 SLC7A5Q01650 507 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 MAP3K10Q02779 954 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 SWT1Q5T5J6 900 aaKnown RBP13.18□□□□□ -0.3
COL27A1-202ENST00000451716 GBP6Q6ZN66 633 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 PLEKHA4Q9H4M7 779 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 GJA3Q9Y6H8 435 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 RGPD3A6NKT7 1758 aaPredicted RBP13.18□□□□□ -0.3
COL27A1-202ENST00000451716 RGPD4Q7Z3J3 1758 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 KIF3CO14782 793 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 DHX15O43143 795 aaKnown RBP13.18□□□□□ -0.3
COL27A1-202ENST00000451716 RPS6P62753 249 aaKnown RBP13.18□□□□□ -0.3
COL27A1-202ENST00000451716 SPP2Q13103 211 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 MTA1Q13330 715 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 TKFCQ3LXA3 575 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 NBPF12Q5TAG4 269 aaPredicted RBP13.18□□□□□ -0.3
COL27A1-202ENST00000451716 WDR93Q6P2C0 686 aa13.18□□□□□ -0.3
COL27A1-202ENST00000451716 SYTL5Q8TDW5 730 aaPredicted RBP13.18□□□□□ -0.3
COL27A1-202ENST00000451716 NFKBIEO00221 500 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 PSMC2P35998 433 aaKnown RBP13.17□□□□□ -0.3
COL27A1-202ENST00000451716 MAPK7Q13164 816 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 DALRD3Q5D0E6 543 aaKnown RBP13.17□□□□□ -0.3
COL27A1-202ENST00000451716 CCDC181Q5TID7 509 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 PADI6Q6TGC4 694 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 ARHGAP27Q6ZUM4 889 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 SYCP3Q8IZU3 236 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 SPATA4Q8NEY3 305 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 LRRC1Q9BTT6 524 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 PCIF1Q9H4Z3 704 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 METTL14Q9HCE5 456 aaKnown RBP13.17□□□□□ -0.3
COL27A1-202ENST00000451716 PLCB1Q9NQ66 1216 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 AGPAT3Q9NRZ7 376 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 HYOU1Q9Y4L1 999 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 ZHX2Q9Y6X8 837 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 WDR46O15213 610 aaKnown RBP13.17□□□□□ -0.3
COL27A1-202ENST00000451716 EIF3DO15371 548 aaKnown RBP eCLIP13.17□□□□□ -0.32e-6■□□□□ 8.5
COL27A1-202ENST00000451716 SLC16A3O15427 465 aaKnown RBP13.17□□□□□ -0.3
COL27A1-202ENST00000451716 PHACTR2O75167 634 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 VCAM1P19320 739 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 NAB2Q15742 525 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 CBWD6Q4V339 395 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 CBWD3Q5JTY5 395 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 CBWD5Q5RIA9 395 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 IQCEQ6IPM2 695 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 NSMFQ6X4W1 530 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 MICALL2Q8IY33 904 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 RIT2Q99578 217 aa13.17□□□□□ -0.3
COL27A1-202ENST00000451716 KIF13BQ9NQT8 1826 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 ATP9AO75110 1047 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 GFPT2O94808 682 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 ZNF131P52739 623 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 INHBEP58166 350 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 MTMR1Q13613 665 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 TTC19Q6DKK2 380 aaPredicted RBP13.16□□□□□ -0.3
COL27A1-202ENST00000451716 HS2ST1Q7LGA3 356 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 ZKSCAN4Q969J2 545 aaPredicted RBP13.16□□□□□ -0.3
COL27A1-202ENST00000451716 GBP3Q9H0R5 595 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 DEFB129Q9H1M3 183 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 SLC38A10Q9HBR0 1119 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 DMGDHQ9UI17 866 aaKnown RBP13.16□□□□□ -0.3
COL27A1-202ENST00000451716 RBBP6Q7Z6E9 1792 aaKnown RBP13.16□□□□□ -0.3
COL27A1-202ENST00000451716 K7ENM7 598 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 GMPSP49915 693 aaPredicted RBP13.16□□□□□ -0.3
COL27A1-202ENST00000451716 UGCGQ16739 394 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 ZSWIM2Q8NEG5 633 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 RPAP3Q9H6T3 665 aaPredicted RBP13.16□□□□□ -0.3
COL27A1-202ENST00000451716 AGO4Q9HCK5 861 aaKnown RBP13.16□□□□□ -0.3
COL27A1-202ENST00000451716 GPRC5CQ9NQ84 441 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.16□□□□□ -0.33e-13■■■■■ 105.8
COL27A1-202ENST00000451716 HACL1Q9UJ83 578 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 RIPK3Q9Y572 518 aa13.16□□□□□ -0.3
COL27A1-202ENST00000451716 LRRN2O75325 713 aa13.15□□□□□ -0.3
COL27A1-202ENST00000451716 TCP1P17987 556 aaKnown RBP13.15□□□□□ -0.3
COL27A1-202ENST00000451716 KCTD19Q17RG1 926 aaPredicted RBP13.15□□□□□ -0.3
COL27A1-202ENST00000451716 RNF10Q8N5U6 811 aaKnown RBP13.15□□□□□ -0.3
COL27A1-202ENST00000451716 CCDC102AQ96A19 550 aa13.15□□□□□ -0.3
COL27A1-202ENST00000451716 RPGRIP1Q96KN7 1286 aa13.15□□□□□ -0.3
COL27A1-202ENST00000451716 KIAA1683Q9H0B3 1180 aa13.15□□□□□ -0.3
COL27A1-202ENST00000451716 RBM12Q9NTZ6 932 aaKnown RBP13.15□□□□□ -0.3
COL27A1-202ENST00000451716 CTDP1Q9Y5B0 961 aaPredicted RBP13.15□□□□□ -0.3
COL27A1-202ENST00000451716 RPTORQ8N122 1335 aa13.15□□□□□ -0.3
COL27A1-202ENST00000451716 MYH11P35749 1972 aa13.15□□□□□ -0.3
COL27A1-202ENST00000451716 TESPA1A2RU30 521 aaPredicted RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms