RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 POLR2MP0CAP2 368 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 DLATP10515 647 aaKnown RBP12.84□□□□□ -0.35
MSH6-204ENST00000445503 CRKP46108 304 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 PMS2P54278 862 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 PLCB3Q01970 1234 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 RFFLQ8WZ73 363 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 THOC1Q96FV9 657 aaKnown RBP12.84□□□□□ -0.35
MSH6-204ENST00000445503 KLC4Q9NSK0 619 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 PCDHGC5Q9Y5F6 944 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 GAP43P17677 238 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 GUCY2CP25092 1073 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 MIER3Q7Z3K6 550 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 ZFPM1Q8IX07 1006 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 GDAP1Q8TB36 358 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 ZNF653Q96CK0 615 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 SEC16BQ96JE7 1060 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 THAP2Q9H0W7 228 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 TDRD3Q9H7E2 651 aaKnown RBP12.84□□□□□ -0.35
MSH6-204ENST00000445503 PI4KBQ9UBF8 816 aa12.84□□□□□ -0.35
MSH6-204ENST00000445503 DDX3XO00571 662 aaKnown RBP eCLIP12.83□□□□□ -0.367e-19■■■■■ 42.4
MSH6-204ENST00000445503 HVCN1Q96D96 273 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 SLITRK6Q9H5Y7 841 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 TM4SF1P30408 202 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 SKOR1P84550 965 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 ZNF844Q08AG5 666 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 RPUSD2Q8IZ73 545 aaKnown RBP12.83□□□□□ -0.36
MSH6-204ENST00000445503 RAPGEF5Q92565 580 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 KAT2BQ92831 832 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 CSRNP1Q96S65 589 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 SH3GL2Q99962 352 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 COA1Q9GZY4 146 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 DBR1Q9UK59 544 aaKnown RBP12.83□□□□□ -0.36
MSH6-204ENST00000445503 PPP1R9AQ9ULJ8 1098 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 CNTNAP4Q9C0A0 1308 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 RASGRF2O14827 1237 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 RPA1P27694 616 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 FMO5P49326 533 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 AP3B2Q13367 1082 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 AADACL2Q6P093 401 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 CCDC63Q8NA47 563 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 GANQ9H2C0 597 aa12.83□□□□□ -0.36
MSH6-204ENST00000445503 LARSQ9P2J5 1176 aaKnown RBP12.83□□□□□ -0.36
MSH6-204ENST00000445503 NDUFB10O96000 172 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 HARSP12081 509 aaKnown RBP12.82□□□□□ -0.36
MSH6-204ENST00000445503 HSPA9P38646 679 aaKnown RBP12.82□□□□□ -0.36
MSH6-204ENST00000445503 ADCY8P40145 1251 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 CLNS1AP54105 237 aaKnown RBP12.82□□□□□ -0.36
MSH6-204ENST00000445503 FAM102BQ5T8I3 360 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 CCDC13Q8IYE1 715 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 SYT2Q8N9I0 419 aaPredicted RBP12.82□□□□□ -0.36
MSH6-204ENST00000445503 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.82□□□□□ -0.36
MSH6-204ENST00000445503 MSH4O15457 936 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 CAND2O75155 1236 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 TAOK1Q7L7X3 1001 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 TAB3Q8N5C8 712 aaPredicted RBP12.82□□□□□ -0.36
MSH6-204ENST00000445503 ELMO3Q96BJ8 720 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 FAM20AQ96MK3 541 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 ARHGEF10LQ9HCE6 1279 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 NUP188Q5SRE5 1749 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 EMSYQ7Z589 1322 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 DISP2A7MBM2 1401 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 SHOX2O60902 331 aaPredicted RBP12.82□□□□□ -0.36
MSH6-204ENST00000445503 CHN1P15882 459 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 TMEM132AQ24JP5 1023 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 ASTE1Q2TB18 679 aaPredicted RBP12.82□□□□□ -0.36
MSH6-204ENST00000445503 ARSHQ5FYA8 562 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 ZNF365Q70YC5 407 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 IRF2BP2Q7Z5L9 587 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 NACC1Q96RE7 527 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 ADAMTS7Q9UKP4 1686 aa12.82□□□□□ -0.36
MSH6-204ENST00000445503 FAM86B1E9PN63 330 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 LCA5LO95447 670 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 EYA4O95677 639 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 FAM86B2P0C5J1 330 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 SHMT1P34896 483 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 CETN2P41208 172 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 SLC29A2Q14542 456 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 C1orf54Q8WWF1 131 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 CHMP6Q96FZ7 201 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 NEUROG2Q9H2A3 272 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 NKIRAS1Q9NYS0 192 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 ODF2LQ9ULJ1 636 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 ALG6Q9Y672 507 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 GRIN2DO15399 1336 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 FOXN3O00409 490 aaPredicted RBP12.81□□□□□ -0.36
MSH6-204ENST00000445503 RC3H1Q5TC82 1133 aaKnown RBP12.81□□□□□ -0.36
MSH6-204ENST00000445503 AMIGO3Q86WK7 504 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 RBM46Q8TBY0 533 aaKnown RBP12.81□□□□□ -0.36
MSH6-204ENST00000445503 SLC35C1Q96A29 364 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 C18orf8Q96DM3 657 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 BTBD6Q96KE9 485 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 TEKT3Q9BXF9 490 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 KCTD10Q9H3F6 313 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 SLC40A1Q9NP59 571 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 CHUKO15111 745 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 ECM2O94769 699 aaPredicted RBP12.81□□□□□ -0.36
MSH6-204ENST00000445503 POTEJP0CG39 1038 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 STX2P32856 288 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 PPP2R5EQ16537 467 aa12.81□□□□□ -0.36
MSH6-204ENST00000445503 KIAA1755Q5JYT7 1200 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms